Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g798 ATGGGCAGCCTCTCTTTCAACACCTTCAGCCCTCTGGATCCACAGAGTTTCTCCGAGGAGTCCAAAATGGTAGTCGATTTCATTGCTGATTACTATAAAAATGTGGAGAAGTACCCGGTTCAAAGCCAAGTTGATCCTGGGTACCTCATGCACCATTGCCCAGACACTGCCCCATATTGTCCAGAGCCCTTGGAAACCATTCTCAAAGATGTATCTGATGGCATCATTCCAGGCCTCACTCACTGGCAGAGCCCCAACTTCTTTGGCTATTTCCAAGCAAATGCTAGCACTGCTGGCTTTCTTGGTGAGATGCTTTGCACTGGACTTAACGTGGTAGGCTTCAACTGGATCGCTTCGCCTGCCGCCACTGAACTCGAATCCATTGCCATAATTTGTAGTTTAGCTGCTGCAAGGGACAAAGTTCTCAAAAAGCTCGGCCATCATAAAATAACTAAGTTGGTGGTCTATGGTTCTGATCAAACACATTCCACCCTTCAAAAGGCCTCAAAGTTGGTTGGTATTCCAGCCTCAAATTTTCGAAGCCTCCCCACTTCATTTTCAAATTATTTTGCACTATGCCCAGACGATGTTCGCACAGCAATGGAGGAGGACATTGGAGCTGGCCTTGTTCCGTTGTTTCTTTGTGCCACTGTGGGAACCACATCCTCTGGGGCTGTTGATCCTCTGGAGGCGCTAGGGCACGTCGCAAAGGACTTCAAGGTGCACCATTTGAATGGGGTTGAACTTGCACACTCGATTAGTATGAACCCCCACAAATGGCTCCTCACCAACATGGACTGCTGTTGTCTATGGATTAAAGAACCAAAGCTATTTGTGGATTCATTATCAACTGCTCCGGAGTTTCTGAGGAACAATGCAAGCGAATCAAAGAAGGTCATAGACTACAAAGATTGGCAAATAGCACTAAGCAGAAGATTCAGGGCCATCAAAGTTTGGGCTGTGGTGCCGAGAAGGTTTGCACTGGTGTGCTTCAGACTGAGGCCCAGAGAAGAAGGGGAAAGCACAGAACTGAACTCAAGGCTGCTAATGGCTGTCAATGGAAGTGGTGCTGCATTCATGACTCATGCAGTGGTGGGTGGGATTTACATCATACGCTGTGCAATTGGGTCCACATTGACTGAGACTAGGCATGTTGATAGTCTATGGAAGCTCATTCAGGAAAAGGCTCAACTCGTACTGCAGGAGCCTGGTTTGGCGCTGGAGGAAGACTACATAGATCCTTGCATAGGAGTAAGTGCAACCTCATTGCATGCTGTTGTCCGTTGGTATTGCAATTATTCTAGTGAAATAAATGCGCATTTGGTTTTTATTGCCTTTTTTGTTGTGGTCTGTAAAGAAAATAGGGAGAATTATGTTTTGGGGGTAAATGGGCCCCCAAATTAA 1404 46.58 MGSLSFNTFSPLDPQSFSEESKMVVDFIADYYKNVEKYPVQSQVDPGYLMHHCPDTAPYCPEPLETILKDVSDGIIPGLTHWQSPNFFGYFQANASTAGFLGEMLCTGLNVVGFNWIASPAATELESIAIICSLAAARDKVLKKLGHHKITKLVVYGSDQTHSTLQKASKLVGIPASNFRSLPTSFSNYFALCPDDVRTAMEEDIGAGLVPLFLCATVGTTSSGAVDPLEALGHVAKDFKVHHLNGVELAHSISMNPHKWLLTNMDCCCLWIKEPKLFVDSLSTAPEFLRNNASESKKVIDYKDWQIALSRRFRAIKVWAVVPRRFALVCFRLRPREEGESTELNSRLLMAVNGSGAAFMTHAVVGGIYIIRCAIGSTLTETRHVDSLWKLIQEKAQLVLQEPGLALEEDYIDPCIGVSATSLHAVVRWYCNYSSEINAHLVFIAFFVVVCKENRENYVLGVNGPPN* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15400101 15401943 + Vvi4g798 Vvi4g798 785577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g798 467 PANTHER OS10G0400500 PROTEIN 8 129 - -
Vvi4g798 467 Pfam Pyridoxal-dependent decarboxylase conserved domain 241 322 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g798 467 Pfam Pyridoxal-dependent decarboxylase conserved domain 46 128 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g798 467 Gene3D - 12 91 - -
Vvi4g798 467 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 8 129 - -
Vvi4g798 467 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 252 273 IPR021115 GO:0016831
Vvi4g798 467 SUPERFAMILY PLP-dependent transferases 13 396 IPR015424 -
Vvi4g798 467 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 321 401 - -
Vvi4g798 467 Gene3D - 99 315 IPR015421 GO:0003824
Vvi4g798 467 Gene3D Aspartate Aminotransferase, domain 1 316 407 IPR015422 GO:0003824
Vvi4g798 467 PRINTS Aromatic-L-amino-acid decarboxylase signature 40 57 IPR010977 GO:0006520|GO:0016831
Vvi4g798 467 PRINTS Aromatic-L-amino-acid decarboxylase signature 105 123 IPR010977 GO:0006520|GO:0016831
Vvi4g798 467 PRINTS Aromatic-L-amino-acid decarboxylase signature 17 36 IPR010977 GO:0006520|GO:0016831
Vvi4g798 467 PRINTS Aromatic-L-amino-acid decarboxylase signature 84 103 IPR010977 GO:0006520|GO:0016831
Vvi4g798 467 PRINTS Aromatic-L-amino-acid decarboxylase signature 58 77 IPR010977 GO:0006520|GO:0016831
Vvi4g798 467 PANTHER OS10G0400500 PROTEIN 321 401 - -
Vvi4g798 467 PANTHER OS10G0400500 PROTEIN 129 322 - -
Vvi4g798 467 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 129 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g798 K01593 DDC, TDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] - vvi:100240846 788.875
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031884 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2