Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g8 ATGGATCGCGATAGTTTACTGGAAAGAGAGAGATATCAGATCCAGCAGATTCGAGAGCTGGAATTTGAGGAATTACAGATCGAGGAAGTCGATGACCTTAACGAATCAGACGACGATGCTGCCACTGATCATGGCTATAGAGGTGCTGCCTCATCCAGTGAATTTACCTTCGACACCTGTTTGGCTTCCTTGCATACATACCTTGGTGAGGTTGAAGACACTCACCATAGGCTAGCTTTCTTAGATGGAGGAGCTGTCTGGGCCTTACCATTGTTCTATCTTGAAGGAGCTGTTCTATTCCCAGAGGCCACCCTTCCTCTGAGAGTTATTAAGTCCAATTTTGTAGCTGCTGTTGAAAAAGCATTGCACCAAGCTGATGCTCCTTATACTATAGGTGTTGTCCATGTCGAAAGGGATCCTGATAGTGGGAGGATAAGGTTCTCAACCATTGGGACAACTGCAGAGATTCGGCAATACCGACGGTTGGAGGATCATTCATTAAATGTGGTTACTCGAGGCCAACAGAGATTCCATTTGAGACGTGGTTGGATTGATGATGATGGAGTGCCATATGGAGAGGTTCAAATTATCCAGGAAGATTTGCCATTAAGAACTCCACGGGATGCATTTGGAAAATTGGCACCATTAAGTAACTTACGAAGCTTTAGTCACCCCCATACATCACAGTCAAATACTTCTCATGCTAAACGGCCTAGATATGGGGATAAAGACAGTGCTTCGGAGTCAAATTCAGAGGAAAGCTTTGATAGTGAGCTCTCTCTGGCAGAAATGAGAATGCATCGATCTGCAATTGATTCTTGTTATGGATATGATACAATTGATGAATCAACAAGCAGTGATGATGACAAGTTTGTGTGTGAGTCAGAACTCCAGTTGGGAAGATCTCATCTAAATGAACCAATAGGGTCAATGCATCTAGACTGTGAGAGAAGGAACAAAAAAGCCAACTTGGGAATTAGGAACAAATCCATTTCAGGAAGTCAATCCTGCAAAGGGAAGGGTCTGAAAGAGGGACAGATGGTTACCAAGTTAAACCAGTCATATGGAGTTCCTAGAGCATTCTGGCCCTATTGGGTTTATCGAATGTATGATTCCTACCATCTTGCTCAAAGGGCTGCAGGTATGTGGAAACAGATAGTTGGTGCACCAAGCATGGATGAACTTGTGAAGAAGCCTGATCTATTGTCATTTCACATAGGCAGCAAAATTCCTTTGTCTGAATCTATTAGACAGGAGCTTCTTGAGATTGATGGTACCTCATATAGATTACGTCGAGAAATTGAGTTACTTGAAAGTTTTGATCGAATTCGATGTAAGAATTGTCAGACTGTAATTGCAAAGCGAAGTGATATGTTGATGATGTCTAGTGAAGGTCCTCTTGGTGCTTATGTGAACCCAGGTGGTTATGTACATGAAATAATGACTCTTTACAAGGCAAATGGCTTAGCACTAACTGGGCGTCCAATTAAAGAATACAGCTGGTTTCCCGGGTATGCATGGACAATTTCAAACTGTGCCACTTGCGAAACCCAAATGGGTTGGCTCTTCACAGCCACAAACAAGAAATTGAAGCCTTCCCTGTTTTGGGGCATTCGGAGTTCCCAAGTTGCTGATGACATGCGCTGA 1647 43.17 MDRDSLLERERYQIQQIRELEFEELQIEEVDDLNESDDDAATDHGYRGAASSSEFTFDTCLASLHTYLGEVEDTHHRLAFLDGGAVWALPLFYLEGAVLFPEATLPLRVIKSNFVAAVEKALHQADAPYTIGVVHVERDPDSGRIRFSTIGTTAEIRQYRRLEDHSLNVVTRGQQRFHLRRGWIDDDGVPYGEVQIIQEDLPLRTPRDAFGKLAPLSNLRSFSHPHTSQSNTSHAKRPRYGDKDSASESNSEESFDSELSLAEMRMHRSAIDSCYGYDTIDESTSSDDDKFVCESELQLGRSHLNEPIGSMHLDCERRNKKANLGIRNKSISGSQSCKGKGLKEGQMVTKLNQSYGVPRAFWPYWVYRMYDSYHLAQRAAGMWKQIVGAPSMDELVKKPDLLSFHIGSKIPLSESIRQELLEIDGTSYRLRREIELLESFDRIRCKNCQTVIAKRSDMLMMSSEGPLGAYVNPGGYVHEIMTLYKANGLALTGRPIKEYSWFPGYAWTISNCATCETQMGWLFTATNKKLKPSLFWGIRSSQVADDMR* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 112192 124427 - Vvi4g8 Vvi4g8 784787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g8 548 ProSiteProfiles Lon N-terminal domain profile. 89 439 IPR003111 -
Vvi4g8 548 Pfam ATP-dependent protease La (LON) substrate-binding domain 89 438 IPR003111 -
Vvi4g8 548 PANTHER CEREBLON 1 544 - -
Vvi4g8 548 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 443 534 IPR004910 -
Vvi4g8 548 SMART lon_5 88 439 IPR003111 -
Vvi4g8 548 MobiDBLite consensus disorder prediction 220 235 - -
Vvi4g8 548 CDD CRBN_C_like 443 543 IPR034750 -
Vvi4g8 548 Gene3D Peptide methionine sulfoxide reductase. 436 548 - -
Vvi4g8 548 MobiDBLite consensus disorder prediction 236 250 - -
Vvi4g8 548 PANTHER BNAA09G40760D PROTEIN 1 544 - -
Vvi4g8 548 Gene3D - 69 197 IPR046336 -
Vvi4g8 548 Gene3D - 371 435 - -
Vvi4g8 548 ProSiteProfiles CULT domain profile. 440 547 IPR034750 -
Vvi4g8 548 SUPERFAMILY PUA domain-like 88 438 IPR015947 -
Vvi4g8 548 MobiDBLite consensus disorder prediction 220 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g8 K11793 CRBN; cereblon - vvi:100268165 1075.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g8 . . . . . . . . . . . . . Car12g00223 Sed01g1255 Cpe07g00203 . Bhi04g00871 Tan02g2544 Cmetu03g1530 . . . Lcy13g1434 . . . . . . . . . . . . . . . . Blo18g00311 Bda01g00940 . . . . . . . . . Cma12g00240 . . . . . . . . . . . Cla08g01207 Cam08g1669 Cec08g1247 Cco08g1364 Clacu08g1366 . Cre08g1151 . Csa02g02252 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009150 1 2 1 0 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 34