Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g807 ATGGTCAAAGTTTCCTCCAAATGCAGAAGTTCCAGACATTCCAAGCTATTAAGATCTTACAGAAATTGTATTCAGGTGGAGTCCAAATATCCAAATTTTCTCTCACACAGAACACACAAGATTTCTCCAATGTGTGGCAGTAATAACATTATACCTGAGGTAGAAGAGGTATTTGAATTTCCAGTTGCAACTGTATTGAATCTTTTAAAGAAATGGAGCCAGTTGCATTTCATGAAAGTAGTCGGTGTACTAGCTTGCACAATGTTGCTTATTCCTTCAGCCAATGCTGTTGATGCTCTCAAAACATGTACTTGCTTACTGAAGGAATGCAGGTTGGAACTCGCCAAGTGCATTGCAAACCCATCTTGCGCAGCCAATGTTGCTTGTCTCCAGACCTGCAACAACAGACCTGATGAGACTGAATGCCAGATTAAATGTGGAGACCTTTTTGAAAACAATGTGGTAGATGAATTCAACGAGTGTGCTGTCTCACGAAAGAAATGTGTGCCTAGAAAATCTGATATAGGAGAATTTCCTGTCCCAGACCCAGCTGTTCTTGTTAAGAACTTTAACATTGCAGATTTCAGTGGGAAGTGGTTCATAACTAGTGGCCTAAATCCTACATTTGATACTTTTGATTGCCAATTGCATGAATTCCACACAGAGTCCAACAAACTTGTGGGAAATTTGTCATGGCGAATACGAACTCCAGACGGTGGGTTTTTCACCCGATCAACAATGCAGAGATTTGTACAAGATCCAAACCAGCCTGGAATACTCTACAATCACGATAATGAGTATCTTCACTACCAGGATGACTGGTATGTTTTGTCATCCAAGATAGAGAACAAACCAGATGACTACGTATTTGTATACTATCAGGGAAGGAATGATGCATGGGATGGATATGGCGGTGCTGTTGTGTACACAAGAAGTGCAACTTTGCCTGAAAGTATTGTACCAGAACTAGAAAAGGCGGCTAAAAGTGTAGGACGAGACTTCAACAAATTCATTAGAACAGACAATACTTGTGGGCCTGAGCCTCCTCTTGTTGAGAGACTTGAAAAGACTGTGGAGGAAGGAGAGAAGACAATTATAAGGGAGGTTGAAGAAATTGAAGGGGAGTTAGGGAAGACTGAAAAGACCTTTTTTGAAACATTGATGGAAGGATTTAAAGAGCTCAGAAAAGATGAGGAATACTTCTTAAAGGAATTGAGCAAAGAGGAGATGGATCTTTTGAGTGAACTAAAAATGGAAGCAAGCGAGGTAGAAAAGCTCTTTGGACGAGCACTGCCACTGAGGAAGCTAAGATAA 1314 40.72 MVKVSSKCRSSRHSKLLRSYRNCIQVESKYPNFLSHRTHKISPMCGSNNIIPEVEEVFEFPVATVLNLLKKWSQLHFMKVVGVLACTMLLIPSANAVDALKTCTCLLKECRLELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPRKSDIGEFPVPDPAVLVKNFNIADFSGKWFITSGLNPTFDTFDCQLHEFHTESNKLVGNLSWRIRTPDGGFFTRSTMQRFVQDPNQPGILYNHDNEYLHYQDDWYVLSSKIENKPDDYVFVYYQGRNDAWDGYGGAVVYTRSATLPESIVPELEKAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKTVEEGEKTIIREVEEIEGELGKTEKTFFETLMEGFKELRKDEEYFLKELSKEEMDLLSELKMEASEVEKLFGRALPLRKLR* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15680402 15687686 + Vvi4g807 Vvi4g807 785586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g807 437 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC 2 437 - -
Vvi4g807 437 Coils Coil 351 371 - -
Vvi4g807 437 CDD lipocalin_VDE 174 349 - -
Vvi4g807 437 SUPERFAMILY Lipocalins 179 349 IPR012674 -
Vvi4g807 437 Pfam VDE lipocalin domain 102 342 IPR010788 GO:0046422
Vvi4g807 437 ProSitePatterns Lipocalin signature. 189 202 IPR022272 -
Vvi4g807 437 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC-RELATED 2 437 IPR044682 GO:0010028|GO:0046422
Vvi4g807 437 Gene3D - 173 355 IPR012674 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g807 K09839 VDE, NPQ1; violaxanthin de-epoxidase [EC:1.23.5.1] - vvi:100257865 884.404
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0623 Cone3ag0662 . . . Cme05g01092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010776 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31