Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g816 ATGGCTTTTAGAATTGATCAGGACTCAGAACTAGAGGATATTAAGGAAACCTTGTTTAATTCTGCGATTAAAGGCAAATGGGAAGATGTTGTAGATCTGTACAGGCGACAGCCGAGGGCCCACAAGGCAAAGATGGTTGTATCAGGGGAAACGGCGTTGCATATGGCGGTCTCAGCTGGCAAAGACGATGTAGTTGAACAGCTAGTTGAACTGATAAGTGAGCCCAAGGTGGAAGCTCTCAGTATTGGAAATGATCGAGGAAACACCCCTCTCCATTTAGCTGCATCCATGGGAAATGCTCACATGTGCAGGTATATCTCAGCCATTGATACGCGACTTGTGGCTGCTCGGAATAGGGAAAAGGAAACCCCACTCTTCTTGGCCGCTCTCCATGGTCACACAGATGCTTTTCTTTGGCTTCGAGAAAAATGCTCAAGCAATGAACCGTATGAATACTGTCGACGGGGTGACGGTAAAACAATTCTTCACTGTGCTATAGCTGGAGAATATTTTGATTTGGCAATTCTAATAATTGATCTGTATGAAGATCTTGTTAACTATGTTGACGACAAGGGACTTACCCCTCTCCATGTCCTGGCGAGTAAGCCCACTGCATTCAGAAGCGGGACTCACCTCCATTTCATCGAAAGACTCATTTATGAGTGTAAGTCTCCAAGCATAACCCAAACCACACAACTGAATGACTCAGAAAAAATTGCCAATACCTACTATTTGGTAGCACCTAGAACTCTTTCTGTTCAAGCTTGCATTGCCTGGCCAGAAAAGCAGAAACTAGAGTAA 801 44.57 MAFRIDQDSELEDIKETLFNSAIKGKWEDVVDLYRRQPRAHKAKMVVSGETALHMAVSAGKDDVVEQLVELISEPKVEALSIGNDRGNTPLHLAASMGNAHMCRYISAIDTRLVAARNREKETPLFLAALHGHTDAFLWLREKCSSNEPYEYCRRGDGKTILHCAIAGEYFDLAILIIDLYEDLVNYVDDKGLTPLHVLASKPTAFRSGTHLHFIERLIYECKSPSITQTTQLNDSEKIANTYYLVAPRTLSVQACIAWPEKQKLE* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15962926 15963850 + Vvi4g816 Vvi4g816 785595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g816 266 Gene3D - 3 145 IPR036770 -
Vvi4g816 266 ProSiteProfiles Ankyrin repeat profile. 86 106 IPR002110 GO:0005515
Vvi4g816 266 SUPERFAMILY Ankyrin repeat 17 200 IPR036770 -
Vvi4g816 266 PANTHER CASKIN 15 258 - -
Vvi4g816 266 SMART ANK_2a 48 77 IPR002110 GO:0005515
Vvi4g816 266 SMART ANK_2a 120 151 IPR002110 GO:0005515
Vvi4g816 266 SMART ANK_2a 191 227 IPR002110 GO:0005515
Vvi4g816 266 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vvi4g816 266 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vvi4g816 266 ProSiteProfiles Ankyrin repeat region circular profile. 48 70 - -
Vvi4g816 266 Pfam Ankyrin repeats (3 copies) 83 143 IPR002110 GO:0005515
Vvi4g816 266 ProSiteProfiles Ankyrin repeat region circular profile. 86 106 - -
Vvi4g816 266 Gene3D - 146 237 IPR036770 -
Vvi4g816 266 ProSiteProfiles Ankyrin repeat profile. 48 70 IPR002110 GO:0005515
Vvi4g816 266 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY ANKYRIN REPEAT SUBUNIT B-LIKE 15 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g816 - - - vvi:100246246 450.669
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .