Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g821 ATGAAGATCATCAGGAGAGACTTAGTCGCCAACGGCCCCGGCAGCGTTAAGATGGTGCCGGTCGATTCTGATGATCTTTGGTATGCTTATAACCTAATTGCTCCAGGAGACACAGTTTTGGCTGTTACTGTTAGGAAAGTCCTAAGAGAGGTGGCTTCGGGAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAATATCCTAGAGAATGAATATGTAAAGATAGGGCAATTCCATACTTTAGAAATTGAGCAGCATCGCCCTTTTGTGTTAAGGAAGGTGGTTTGGGACTCATTGGCTTTAGATACACTCAATCAGGCCTCTGATCCTGCTGCAAGTGCTGATTTAGCAGTGGTTTTGATGCAAGAAGGATTAGCACATGTTATCCTCATTGGTAGAAGCCTTACAATTACTCGCTCCCGGATAGAAGCTTCAATTCCTCGCAAACATGGGCCTGCTATTGCTGGTTATGAGGCAGCTTTGAATAAGTTTTTCGAGAATGTTTTACAGGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCAAGTCCAGGTTTCACCAAGGATCAATTTCATCGTCATTTATTGTTGGAGGCAGAACGAAGACAGCTGAGATCTATTATTGAGAATAAGTCACGCATAATTCTTGTGCATACGTCCTCTGGATACAAGCATAGTTTAAAAGAGGTTTTGGATGCACCAAATGTGATGAACATGATAAAGGATACAAAAGCAGCACAAGAGGTCCAAGCTCTCAAAGATTTTTTCAACATGCTTTCAAATGATCCAGCTCGGGCATGCTATGGACCAAAGCATGTTGAGGTTGCCCATGAAAGAATGGCTGTGCAGACGCTTCTTATAACTGATGATCTCTTCAGGAGTGCTGATATTCCAACAAGGCAAAAATATGTGAATTTTGTCAATTCAGTCAAGGATTCAGGGGGCACTGCTCATATATTCTCATCCATGCATGTGTCAGGAGAACAGCTGGCACAGCTGACTGGAATTGCAGCAATTCTCCGGTTCCCTCTGCCAGACCTGGAAGACATCGAGATGTGA 1137 43.62 MKIIRRDLVANGPGSVKMVPVDSDDLWYAYNLIAPGDTVLAVTVRKVLREVASGGRDAERVKLKLEIKVEVADYDKVGSVLRIRGKNILENEYVKIGQFHTLEIEQHRPFVLRKVVWDSLALDTLNQASDPAASADLAVVLMQEGLAHVILIGRSLTITRSRIEASIPRKHGPAIAGYEAALNKFFENVLQAFLKYVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRSIIENKSRIILVHTSSGYKHSLKEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLSNDPARACYGPKHVEVAHERMAVQTLLITDDLFRSADIPTRQKYVNFVNSVKDSGGTAHIFSSMHVSGEQLAQLTGIAAILRFPLPDLEDIEM* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16164434 16185831 + Vvi4g821 Vvi4g821 785600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g821 378 Gene3D eRF1 domain 2 136 269 IPR042226 -
Vvi4g821 378 TIGRFAM pelota: mRNA surveillance protein pelota 2 370 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vvi4g821 378 SUPERFAMILY L30e-like 264 370 IPR029064 -
Vvi4g821 378 SUPERFAMILY Translational machinery components 133 271 - -
Vvi4g821 378 PANTHER PROTEIN PELOTA HOMOLOG 1 378 - -
Vvi4g821 378 Pfam eRF1 domain 1 1 128 IPR005140 -
Vvi4g821 378 PANTHER PELOTA 1 378 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vvi4g821 378 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 129 IPR038069 -
Vvi4g821 378 SMART eRF1_1_2 1 130 IPR005140 -
Vvi4g821 378 Pfam eRF1 domain 2 137 268 IPR005141 -
Vvi4g821 378 Pfam eRF1 domain 3 272 370 IPR005142 -
Vvi4g821 378 Gene3D - 270 378 IPR029064 -
Vvi4g821 378 Gene3D Pelota, domain A 1 132 IPR038069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g821 K06965 PELO, DOM34, pelA; protein pelota - vvi:100256390 737.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0616 Cone3ag0656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003303 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 2 15 1 49