Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g822 ATGGCCACCTCGGAGAAGCTCCTCACACACCTCCGACGACGACGTTTCCGTGAAATCTCCTCTCTTTCTAACTCGCTCTCCTTTGCCGTCCCTCCTCCAATCTCACATCGCAGCCTCATAAACCCTAATTCTCACTATCAGCTTCACCATCATGGCTTGTTTAAATCCAGACATAATCTTTATTTTCCGTCAAATCTCATCTCACTTGCGCCATTCAGCTTCTCTCACTCGCGGTCCTTCTCCAGCGGTGATTCGGACTACGTGGGAACGGACGTTGCTGTCGAGTCGGCCATTGAGTCGATTCCTCCAGTTCGTTTTCTGGTTTCATTGCTGGATGGATACCATGATGTTACTGGATGGCCTTGGTGGATAATAATTGCTTCCTCTACTTTGGCTCTCAGAATTGCACTATTCCCCATTTTGGTGCTGCAACTTAAGAAAATGAAAAGGATTGCAGAGTTGTTACCTAAATTGCCTCCTCCACTGCCACCACCCCTCTCAGGAAGAAGTTATTTTGACCAAATTTCACTTTTTCGTAAGGAAAAACGAGCAATTGGCTGCCCTTCATTTTTATGGTTCCTTGCATCCTTATCCACCCAGGTGCCATGCTTTATCTTGTGGATGATGAGCATTCGATGGATGTCATTGGATCATCATCCTGGCTTTGATTCTGGTGGTGCTCTGTGGTTTCAAAATTTGACTGAATTTCCAAATGGTGTTTTGGGACCCATCTTTCCAATACTGATTTCTGGTTTGCATTTCATAAATGTTCAGATTTCTTTTAGCACCTCTTCAGTTGGACAAGTACCTGGACTTCTTGGTTTATTAGCCAAATACTACAAATTCTATTTGGAGATTTTGACGGTACCTATATTCTTTACTGGGTTCTATATTCCCCAGGGCAGTTTAGTCTATTGGGTCACCAACAGTTCATTATCTGCCATTCAGCAATTAACTATCAGGCATCCCACTGTTCGTGCAAAGCTGGGATTACCAGATAAGCAAGCTCCAAATGCAGCTGCAAAAGAAATGCATACACCTGGAGAAGGATCATTAGGTCCACCAACAAAGCAGCAATACATTTCTCCAGAAAGTGTATCCCCTCAAGAACTGCCTGGAATCAAATCAATGTATCCTCGAAGGAAGCAGCATCAAATTCCCATTGAAAGCCTGTCCCCTCGAGATCTGATTGCTCTTTCAGTTCAAATTTTATCTAAAGGAGATAAAGATGGAGCAATTCCATTCATACGCATGGCACTTGACAAGGATCCCAATTATGTAAGAGCTTTGGTTGTCATGGGGCAGACTCTATTGCAAAAGGAACAAGTGGAAGAGGCCAGTGATTACTTAGAGCGTGCTGTTACCAAGCTCTTTCTCATCGGCCATCCAACAGAAGATGAGGTTGATCTTATGATTCTTGCATCTCAATGGGCTGGTGCTGCTTGTGTAAGACAGGGAAAAACTGCAGAAGGACTAGTACACCTAGAACGAATAGCAAATTTGAAAGAGCCAGATGAACCAAAGAGCAAAGCCCACTACTTTGACGGGTTGCTATTGCTTGCAAGTACTTTATATCGTGAAGGTCGTAACGCAGAAGCAGCAAAGCATCTGCGCAAGGCAGCTGCTTACAACCCAGCCTACAAGGAGTATTTGGAAGAATGTGAGAGAGAAGACGGCTTTGTGAATGATCTGGTCAGCAGCAGAAGAGGAGATTACTGA 1719 44.15 MATSEKLLTHLRRRRFREISSLSNSLSFAVPPPISHRSLINPNSHYQLHHHGLFKSRHNLYFPSNLISLAPFSFSHSRSFSSGDSDYVGTDVAVESAIESIPPVRFLVSLLDGYHDVTGWPWWIIIASSTLALRIALFPILVLQLKKMKRIAELLPKLPPPLPPPLSGRSYFDQISLFRKEKRAIGCPSFLWFLASLSTQVPCFILWMMSIRWMSLDHHPGFDSGGALWFQNLTEFPNGVLGPIFPILISGLHFINVQISFSTSSVGQVPGLLGLLAKYYKFYLEILTVPIFFTGFYIPQGSLVYWVTNSSLSAIQQLTIRHPTVRAKLGLPDKQAPNAAAKEMHTPGEGSLGPPTKQQYISPESVSPQELPGIKSMYPRRKQHQIPIESLSPRDLIALSVQILSKGDKDGAIPFIRMALDKDPNYVRALVVMGQTLLQKEQVEEASDYLERAVTKLFLIGHPTEDEVDLMILASQWAGAACVRQGKTAEGLVHLERIANLKEPDEPKSKAHYFDGLLLLASTLYREGRNAEAAKHLRKAAAYNPAYKEYLEECEREDGFVNDLVSSRRGDY* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16186695 16227869 + Vvi4g822 Vvi4g822 785601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g822 572 MobiDBLite consensus disorder prediction 352 366 - -
Vvi4g822 572 SUPERFAMILY TPR-like 397 549 IPR011990 GO:0005515
Vvi4g822 572 MobiDBLite consensus disorder prediction 338 368 - -
Vvi4g822 572 PANTHER OXA1 13 557 IPR001708 GO:0016021|GO:0032977
Vvi4g822 572 Pfam Tetratricopeptide repeat 428 454 IPR019734 GO:0005515
Vvi4g822 572 Gene3D Tetratricopeptide repeat domain 386 556 IPR011990 GO:0005515
Vvi4g822 572 PANTHER ALBINO3-LIKE PROTEIN 3, MITOCHONDRIAL 13 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g822 - - - vvi:100247921 1114.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004055 1 1 1 1 1 0 1 2 1 1 3 1 1 0 1 1 2 1 1 1 1 1 1 2 3 2 1 1 3 1 38