Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g824 ATGACGATGACCCAGTTTGCAATGGTTGAGGAATTGGCTTTTCTTATTAAGGACAATCTTCCTTGCAAGCATCTTGTTCTCTCAATTGAAGAAGCCTTGGTCAACTTCCTTCAAGACGATAACAGTCTAGATGGGGTCATGGAGCTGGAACCGATGAATCCATACGAGCGTCTTCTCGTGCATCGTCTTGCTGATATATTTGGATTTGCCCATGTATCCATTGGCGAAGGAGATGAAAGGCATCTAACTTTAGAGCGGTGCCCAGAGACGTCAATACCTTCAATTCTTGTTAGTGATATTATATGGCAGTATCAGGAATCTCAACCTCCAACAATGTCACACCAACTGTTAAGAAGAAATGAAGCTTCCCCAGTGTTGAAAGCTACAGAGCCTTCTCTCCAGTATTCACTTGAAGAGAGGGAGGCGGCTTATCTGGCTGCTCGTGAGCGGATTTTCTCAATGGATGAAGGTGAGATCAGAGAATCTGTGCAGCAGAAGCCCCGAAATGTTCCTGTGGTTGCTCGACGCATGATTGCCCATGCGCTAGGTCACAGAATCAACTCATGCAACCAGGATGTTAAAGAATGTGAAGGCCAAATTGCAGAGCTGACTGTCCAAGACAAAGATTCGAGTGCAGAAGCTTGTCAAAATGAAAACTCGCGCAGCAAAACAAGTGTGGGTAGCCATAATGGTAATGGTGCATTGTCTCATGGTGGAAGGAAGACACCCCAGAAATCAGCAGACAGGAGTCCTTCCAACAGTAGCAGTCCCCCAAGCAGAAGAAACAGATCGCGTGTTTGCACAGAGAACCCAAAGGAAGTACATTTGGGAGCTGCAAGGAGGATGTTTGCTCATGCCCTGGGATTGCAATCACCAAAGGATGCTCTTATTTCAAAACCCGGAAACACACAGCAGATGAACACTGAGTAG 930 46.13 MTMTQFAMVEELAFLIKDNLPCKHLVLSIEEALVNFLQDDNSLDGVMELEPMNPYERLLVHRLADIFGFAHVSIGEGDERHLTLERCPETSIPSILVSDIIWQYQESQPPTMSHQLLRRNEASPVLKATEPSLQYSLEEREAAYLAARERIFSMDEGEIRESVQQKPRNVPVVARRMIAHALGHRINSCNQDVKECEGQIAELTVQDKDSSAEACQNENSRSKTSVGSHNGNGALSHGGRKTPQKSADRSPSNSSSPPSRRNRSRVCTENPKEVHLGAARRMFAHALGLQSPKDALISKPGNTQQMNTE* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16253356 16258888 + Vvi4g824 Vvi4g824 785603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g824 309 MobiDBLite consensus disorder prediction 290 309 - -
Vvi4g824 309 Gene3D - 2 123 IPR036867 GO:0003676
Vvi4g824 309 Coils Coil 186 206 - -
Vvi4g824 309 CDD R3H_encore_like 22 87 - -
Vvi4g824 309 MobiDBLite consensus disorder prediction 206 264 - -
Vvi4g824 309 SMART R3H_4 10 87 IPR001374 GO:0003676
Vvi4g824 309 ProSiteProfiles R3H domain profile. 23 88 IPR001374 GO:0003676
Vvi4g824 309 PANTHER RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1 1 299 - -
Vvi4g824 309 ProSiteProfiles SUZ domain profile. 91 156 IPR024771 -
Vvi4g824 309 Pfam R3H domain 25 85 IPR001374 GO:0003676
Vvi4g824 309 MobiDBLite consensus disorder prediction 206 273 - -
Vvi4g824 309 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 1 299 - -
Vvi4g824 309 Pfam SUZ domain 117 155 IPR024771 -
Vvi4g824 309 SUPERFAMILY R3H domain 13 120 IPR036867 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g824 - - - vvi:104879148 590.497
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g824 . . . . . . . . . . . . . . . Cpe07g00787 . . . . . . . . . . . . . . . Cone5ag0927 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008321 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33