Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g829 ATGGTTTGTTCCTATTGGCTCCGTGGGAGGTGCAACAGAAACCCTTGTAGGTTCCTGCACCAAGAATTGCCCCAAAACACCCACTATCAAATTTCAAATCAGTTCCGCAAAAACTGCTGGCAGAGGAATCCCGACTCTGATTCGAAGAGTGCATCAAGTTTAACGAGTCTCTATAGGTCATCAGGTTCAACACCTCCGAAGTGTTCATCAGCTTCAAATCAATCCCATAGAAACAACAGGGAGAGGACTCTCTATTCTGACCAGAAGGGTGAATGGGACTCAACTAATCTAAGGTGTTCATCAAGTCCAACAAGAGCAGGAAGTAGCTCTGGAAATGGAATTACACAGAAAGTAATTGGAGAAAGGGTCTGCAAGTACTGGCTACATGGAAATTGTGTGGAGGCAGATAGGTGCCAGTATCTCCATTCATGGTTTAAGGGCCATGGGGTTTTCAAGTTGGCAGAGCTTAATGGGCACATCAAGGCCATCTCAGGAATTGTGCTTCCTTCTGGCTCAGAGAAGCTCTATACTGCCAGTGGAGATGGGTATATACGGGTTTGGGACTGCCATACTGGTCACTGTGATGGTGCAGTCAACCTTGGAGGGGAAATTGGGTCTTTAATCAGTGCGGGCCCATGGGTATTTGCTGGGATAAAAAATGTTGTTAAAGCATGGAATATTGAGTATTGTGCTGATCTCTCTCTGGATGGACCAGTTGGGCAAATTTATGCTATGGTGGTGGATCATGATATGCTCTTCGCAGGGGCAGAGAATGGCACTATATATGCATGGAAACCCAATAAGGAAACCAATGCTTTTGAGCTGGCTACAACATTGGGAGGCCACAATTGTGCTGTGGTTTCGCTCACAGTTGGTGGTGGGAAGCTATATTCTGGTTCCATGGACAATACAATAAGAGTGTGGGATCTTAATACATTACAGTGTATTCATACTCTGAAGGAGCATGCATCAGTTGTGATGTCTCTTGGTTGTTGGGGTCCCTATTTGATATCATGTTCATTGGACCAAACAATTAAGGTTTGGTTTGCTACTGAAGCTGGCAACTTGGAAGTGACCTATACACATAATGAAGAACATGGTGTGCTTGCACTTTTCGGTATGTTCAATTCAGAAGGAAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTTCGGCTATATGAATTACCATCATTCACCGAGAGGGCCAGGATTTTTGCAAAGGAAGAAGTCCGAGCGATTCAAATAGGTCCTGGGGGACTCTTTTTCACTGGGGATGGAACTGGACAAGTTGATATTTGGAAATGGCAGGCGGAGCCAACTTCATTGGCATCCTGA 1341 44.74 MVCSYWLRGRCNRNPCRFLHQELPQNTHYQISNQFRKNCWQRNPDSDSKSASSLTSLYRSSGSTPPKCSSASNQSHRNNRERTLYSDQKGEWDSTNLRCSSSPTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADRCQYLHSWFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASGDGYIRVWDCHTGHCDGAVNLGGEIGSLISAGPWVFAGIKNVVKAWNIEYCADLSLDGPVGQIYAMVVDHDMLFAGAENGTIYAWKPNKETNAFELATTLGGHNCAVVSLTVGGGKLYSGSMDNTIRVWDLNTLQCIHTLKEHASVVMSLGCWGPYLISCSLDQTIKVWFATEAGNLEVTYTHNEEHGVLALFGMFNSEGKPILLCSCNDNSVRLYELPSFTERARIFAKEEVRAIQIGPGGLFFTGDGTGQVDIWKWQAEPTSLAS* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16332208 16334957 - Vvi4g829 Vvi4g829 785608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g829 446 PRINTS G protein beta WD-40 repeat signature 175 189 IPR020472 -
Vvi4g829 446 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Vvi4g829 446 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Vvi4g829 446 Gene3D - 152 443 IPR015943 GO:0005515
Vvi4g829 446 MobiDBLite consensus disorder prediction 42 79 - -
Vvi4g829 446 SUPERFAMILY WD40 repeat-like 151 438 IPR036322 GO:0005515
Vvi4g829 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 156 188 - -
Vvi4g829 446 PANTHER WD REPEAT-CONTAINING 1 446 - -
Vvi4g829 446 SUPERFAMILY CCCH zinc finger 121 143 IPR036855 GO:0046872
Vvi4g829 446 Pfam WD domain, G-beta repeat 314 348 IPR001680 GO:0005515
Vvi4g829 446 Pfam WD domain, G-beta repeat 277 309 IPR001680 GO:0005515
Vvi4g829 446 Pfam WD domain, G-beta repeat 153 188 IPR001680 GO:0005515
Vvi4g829 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 312 - -
Vvi4g829 446 Gene3D - 1 147 - -
Vvi4g829 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 188 IPR001680 GO:0005515
Vvi4g829 446 ProSiteProfiles Zinc finger C3H1-type profile. 1 23 IPR000571 GO:0046872
Vvi4g829 446 MobiDBLite consensus disorder prediction 89 112 - -
Vvi4g829 446 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Vvi4g829 446 PANTHER - 1 446 - -
Vvi4g829 446 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Vvi4g829 446 SMART c3hfinal6 1 22 IPR000571 GO:0046872
Vvi4g829 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 318 IPR001680 GO:0005515
Vvi4g829 446 MobiDBLite consensus disorder prediction 42 112 - -
Vvi4g829 446 SMART WD40_4 353 396 IPR001680 GO:0005515
Vvi4g829 446 SMART WD40_4 312 349 IPR001680 GO:0005515
Vvi4g829 446 SMART WD40_4 149 188 IPR001680 GO:0005515
Vvi4g829 446 SMART WD40_4 228 265 IPR001680 GO:0005515
Vvi4g829 446 SMART WD40_4 399 436 IPR001680 GO:0005515
Vvi4g829 446 SMART WD40_4 272 309 IPR001680 GO:0005515
Vvi4g829 446 ProSiteProfiles Zinc finger C3H1-type profile. 123 145 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g829 - - - vvi:100244416 923.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002775 4 2 1 3 1 1 1 1 1 1 0 1 1 1 1 1 1 5 1 1 1 3 1 1 1 1 1 2 1 6 47