Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g832 ATGCCTCATTTTTCATGTTTCTATGTTTTAAAAACATTTGCAGCTCCTGGGAATGCGAAGGCTTTGAATTGGAGGTCTCATGGGCAGAAGAGAAACATCGTCTGTGCTTGTATGGCGCCTCCCAGGAACTTGCGCACGGATGGATTTGCAGCCACAAAATTCAATGATTCATCTCATCTAAAGAATCCAAGTGTTGATGGAGACCGTGAGGATGATTCTGATGTTCTTGTTGAGTGTAGAGATGTGTATAAGTCATTTGGGGAGAAGCACATCTTGAGAGGTGTGAGTTTTAAGATTAGACATGGGGAAGCTGTTGGGATTATTGGGCCTTCTGGCACTGGGAAATCAACAGTTCTGAAGATTATTGCGGGACTTCTTGCTCCAGACAAGGGAGAGGTCTTAATCCGAGGTAGAAGGAGGCATGGTTTAATCAGTGACCAAGAGATATCTGGTCTTCGAATAGGCTTGGTCTTTCAGAGTGCTGCACTTTTTGATTCTTTAACTGTTCGTGAAAATGTTGGTTTCCTTTTATATGAAAACTCCAGCATGCCAGAGGATCAAATTCACGAGCTCGTTACAGAATCTTTGGCTGCTGTTGGATTGAAGGGCGTTGAGGAGCGGTTACCCTCTGAGTTGTCTGGTGGAATGAAGAAACGAGTTGCATTAGCTCGGTCTATTATTTTTGATACCACCAAGGATGCAATTGAACCAGAGGTGCTATTATATGATGAACCAACTGCTGGGCTTGATCCAATCGCATCTACTGTAGTTGAAGATCTCATCCGCTCTGTCCATTTAAAAGAGGAAGATGCACCTGGGAAGCTTGGGAAGATTGCATCATATGTAGTTGTCACTCATCAACATAGTACCATTAGAAGAGCCGTTGACAGGCTGTTGTTTCTTTATGATGGGAAAATCGTCTGGGAAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGTTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAG 1014 43.39 MPHFSCFYVLKTFAAPGNAKALNWRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSHLKNPSVDGDREDDSDVLVECRDVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVLIRGRRRHGLISDQEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMPEDQIHELVTESLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDAIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHLKEEDAPGKLGKIASYVVVTHQHSTIRRAVDRLLFLYDGKIVWEGMTDEFTTSTNPIVQQFASGSLDGPIRY* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16404475 16417806 + Vvi4g832 Vvi4g832 785611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g832 337 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 24 337 - -
Vvi4g832 337 SMART AAA_5 101 305 IPR003593 -
Vvi4g832 337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 328 IPR003439 GO:0005524
Vvi4g832 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 318 IPR027417 -
Vvi4g832 337 Gene3D - 64 329 IPR027417 -
Vvi4g832 337 CDD ABC_Org_Solvent_Resistant 77 326 - -
Vvi4g832 337 Pfam ABC transporter 92 247 IPR003439 GO:0005524
Vvi4g832 337 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Vvi4g832 337 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 24 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g832 - - - vvi:100246248 643.269
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01043 Cam03g1088 Cec03g1096 Cco03g1087 Clacu03g1066 Cmu03g1649 Cre03g1353 Lsi06g00723 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006421 1 0 0 1 1 1 2 2 1 1 1 1 2 0 1 2 1 2 1 2 1 1 1 2 2 2 1 1 3 1 38