Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g833 ATGGGAATTCAAGGGAATGCTTCTTCCCTCAAACCCTACAAAAACCCTAACCCACATCACTCATTGCCATTGCCACTGTCACTGCTTTTGTTGATACTACTGATCTACCCAAACCCACCTCTTTCTGCTTCTGTTGAACTCAACCCCGATCACCAAGCCTCTCTACTCCTCTTCAAATCATGGCTGCAAGACCCTAACCAAGCATTGTCAACATGGGTTGGGTTCAACTGCACCAGTTGGGCTGGACTCACCTGCCATAATCAAACTGGCTGGCTCATTTCCCTCAACCTAACAGCCATAAACTTGTCAGGACCCCTTCACCCCATGTTGTGCATGATCACCACTCTTGAAACCCTAGTTTTGTCACGTAACAATTTCAATGGTACAATTCCTCAGTGTTTTGGAAATATCTGGGGTTTGAAAACCCTAGACCTTGGTTTTAATAGGTTTTCTGGTGATATACCTGGTACATTTGTGAAACTCAGGCACTTGAGAGAGCTTTTGTTGAATGGAAACCAAGGTTTGGGGGGTTTTTTGCCTAGTTGGATTGGTAATTTCTCGAAAAAGCTTGAGAAACTTGACTTGAGTTCCAACATGTTTAGAGGAAAAATTCCAAAAAGTTTGTTTTACTTGGAATCACTTGAATATTTGGATCTTGGAAACAATTATTTGTTGGGAAATGTTGGTGAGTTTCATCAACCTTTGGTTTATCTAAATCTTGGTTCTAATGAGCTTTCTGGTACTCTGCCTTGTTTTTCGGCATCTGTTGAATCTCTCAGTGTTCTCAATTTGGCAAATAACTCAATCGTGGGAGGAATACCGACATGTATTGCTTCGCTTAGATCATTATCACGGCTGAATCTATCCTCTAATGGGTTAAAATATGAGATATCTCCAAGGCTTGTGTTTTCAGAGAAGCTTCTTGTGCTAGACTTGAGTTTCAATGACTTATCAGGTCCTCTACCGAGTAAAATTGCAGAGACAACAGACAAATCAGGGCTTGTTCTTCTTGACCTTTCACACAATCAAGTCTCTGGTGAAATTCCATCAAGGATTACGGAACTGAAAAGTCTGCAGGCACTGTTTCTTTCTCATAATCTTCTCACCGGTGAAATCCCTGCCAGGATTGGTAATTTGACCTATCTGCAAGTAATTGATCTTTCCCACAACTCGCTTTCAGGTTCCATCCCTTCAAACATTGTTGGGTGTTTTCAGCTCCTTGCTTTGATATTGAATGACAACAATCTTTATGGTGAGATTCAACCAGAGCTTGATGCATTGGATAGTTTGAAAATATTGGATATCAGTAACAACAAGATTTCTGGGGAGATTCCTCTGACGTTGGCTGGTTGTAAATCACTGGAGGTTGTAGACTTCAGCTGCAACAATCTCTCTGGAGCTTTAAATGATGCAATAACCAAATGGCAAAATCTCAGGTTCCTGTCTTTGGCTCGAAATAAATTCAACGGAGCTCTTCCCAATTGGTTGTTTACATTCCAAATGATGCAAGCAATGGATCTTTCAGGCAACAGGTTCTCTGGCTTCATACCGGATGGTAACTTCAACATTAGCTTGAATTTCAACTACAATGACATTGGTCCAAGAACCCCTGAGGAGCCACTGATTACAATCCAAGATCCTGAGATCAAAGCTTTTGCAACTGTTGCTGGTAGTAATGAACTAAGCTTCAACTATGATCTATTTTCAACAGTGGGAATTGATTTATCTGGAAATTTGCTACATGGTGAGATACCTGCAGGTCTCTTTGGACTGCAGGGTTTGGAATACCTGAATTTATCATATAATTTTCTTGATGGTCAGATTCCTGGTTTAGAAAAGATGCAGAGATTAAGGATATTGGATTTGTCGCATAATTCTTTGTCGGGTCAGATTCCAGAAAACATTTCCAGCCTTCGAAATCTGACGCTCTTGAATCTTTCATACAACTGCTTTTCTGGTATTGTTCCAAAGGAGCAGGGCTATTGGAGGTTTCCAGGAGCATTTGCAGGGAATCCAGGATTGTGCGTGGAGTCCTCAGGTGGAAAATGTGAGATGGCAAGTATCCCAACAGTGCCTGCAAAGGCGTTTAAAGAAGAAATGGAGGATGGACCGATTTCAGTTTGGGTGTTTGGTGTAAGTGCCATTGTTAGTTTCTATTCTGGTGTTGTTTCTATGTTTTGTTCGGCTCGAGCTAGAAATTACATTATGCAGACAAAAGTTTAA 2223 41.07 MGIQGNASSLKPYKNPNPHHSLPLPLSLLLLILLIYPNPPLSASVELNPDHQASLLLFKSWLQDPNQALSTWVGFNCTSWAGLTCHNQTGWLISLNLTAINLSGPLHPMLCMITTLETLVLSRNNFNGTIPQCFGNIWGLKTLDLGFNRFSGDIPGTFVKLRHLRELLLNGNQGLGGFLPSWIGNFSKKLEKLDLSSNMFRGKIPKSLFYLESLEYLDLGNNYLLGNVGEFHQPLVYLNLGSNELSGTLPCFSASVESLSVLNLANNSIVGGIPTCIASLRSLSRLNLSSNGLKYEISPRLVFSEKLLVLDLSFNDLSGPLPSKIAETTDKSGLVLLDLSHNQVSGEIPSRITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSHNSLSGSIPSNIVGCFQLLALILNDNNLYGEIQPELDALDSLKILDISNNKISGEIPLTLAGCKSLEVVDFSCNNLSGALNDAITKWQNLRFLSLARNKFNGALPNWLFTFQMMQAMDLSGNRFSGFIPDGNFNISLNFNYNDIGPRTPEEPLITIQDPEIKAFATVAGSNELSFNYDLFSTVGIDLSGNLLHGEIPAGLFGLQGLEYLNLSYNFLDGQIPGLEKMQRLRILDLSHNSLSGQIPENISSLRNLTLLNLSYNCFSGIVPKEQGYWRFPGAFAGNPGLCVESSGGKCEMASIPTVPAKAFKEEMEDGPISVWVFGVSAIVSFYSGVVSMFCSARARNYIMQTKV* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16418700 16420923 - Vvi4g833 Vvi4g833 785612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g833 740 SMART LRR_sd22_2 591 613 - -
Vvi4g833 740 SMART LRR_sd22_2 379 402 - -
Vvi4g833 740 SMART LRR_sd22_2 614 637 - -
Vvi4g833 740 SMART LRR_sd22_2 187 219 - -
Vvi4g833 740 SMART LRR_sd22_2 427 459 - -
Vvi4g833 740 Gene3D Ribonuclease Inhibitor 402 688 IPR032675 -
Vvi4g833 740 PRINTS Leucine-rich repeat signature 382 395 - -
Vvi4g833 740 PRINTS Leucine-rich repeat signature 614 627 - -
Vvi4g833 740 Coils Coil 740 740 - -
Vvi4g833 740 Gene3D Ribonuclease Inhibitor 50 160 IPR032675 -
Vvi4g833 740 PANTHER 3, PUTATIVE-RELATED 20 740 - -
Vvi4g833 740 ProSiteProfiles Leucine-rich repeat profile. 593 615 IPR001611 GO:0005515
Vvi4g833 740 Pfam Leucine Rich Repeat 429 451 IPR001611 GO:0005515
Vvi4g833 740 Pfam Leucine Rich Repeat 382 402 IPR001611 GO:0005515
Vvi4g833 740 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Vvi4g833 740 Pfam Leucine rich repeat 115 173 IPR001611 GO:0005515
Vvi4g833 740 Pfam Leucine rich repeat 573 627 IPR001611 GO:0005515
Vvi4g833 740 SUPERFAMILY RNI-like 238 658 - -
Vvi4g833 740 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 740 - -
Vvi4g833 740 Gene3D Ribonuclease Inhibitor 161 232 IPR032675 -
Vvi4g833 740 SUPERFAMILY L domain-like 49 323 - -
Vvi4g833 740 Gene3D Ribonuclease Inhibitor 233 401 IPR032675 -
Vvi4g833 740 SMART LRR_typ_2 355 378 IPR003591 -
Vvi4g833 740 SMART LRR_typ_2 379 403 IPR003591 -
Vvi4g833 740 SMART LRR_typ_2 280 304 IPR003591 -
Vvi4g833 740 SMART LRR_typ_2 638 660 IPR003591 -
Vvi4g833 740 SMART LRR_typ_2 427 451 IPR003591 -
Vvi4g833 740 SMART LRR_typ_2 614 637 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g833 - - - vvi:100251384 1404.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0928 Cone1ag1682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01042 Cam03g1087 Cec03g1095 Cco03g1084 Clacu03g1065 Cmu03g1648 Cre03g1350 . . . Cme02g00927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012382 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28