Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g841 ATGAGCTATGCAGTTAAGAATGTGGACTTATGTTTTCATTACTACTTGAAGACAGGAACTTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGGATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGAAGTACATGTAAATTTCACCATCCTCAACCATCTAGTATGATGGTTTCATTGCGTGGGATCACAAACTGGCCCTTGTCAAGAGCATCTTTTATACCCAGCCCACGCTGGCAAGCTCCCTCAAGTTATGCACCTTTGATGCTACCTCAGGGAGTGGTATCAGTCCCAGGCTGGAATGCATATAGTGGTCAGTTGGGTTCACCTTCAGAGAGCCAGCAGCAAACAGGAGGAAACAATCAGATTTATGGAACTTCACGGCAGAGTGAACAACCAAATACAGGATCTCAAGGGACATTTTCTCCGTACCGGTCTGGCTCTGTTCCCATAGGATTTTATGCATTGCAGAGAGAGAATGTATTTCCTGAGAGACCTGGACAGCCTGAATGCCAGTTTTACATGAAAACTGGAGATTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGGGAGAACCTTTGTGCATTTTTTATTCTCGTTATGGGATCTGCAAATTTGGTCCAAGTTGCAAGTTTGACCACCCTATGGGAATCTTCGCATACAATCTGTCTGCATCATCTTCAGCTGATGCTCCAGTTGTTCGACGATTGCTCCACAAAGCCCAGGCGACTTTCACTGCCAGAGACAAGACAGATGCCTCCTGGTGA 915 45.36 MSYAVKNVDLCFHYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPDEIDCAYYLRTGQCKFGSTCKFHHPQPSSMMVSLRGITNWPLSRASFIPSPRWQAPSSYAPLMLPQGVVSVPGWNAYSGQLGSPSESQQQTGGNNQIYGTSRQSEQPNTGSQGTFSPYRSGSVPIGFYALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPTPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFAYNLSASSSADAPVVRRLLHKAQATFTARDKTDASW* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16567671 16576903 - Vvi4g841 Vvi4g841 785620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g841 304 ProSiteProfiles Zinc finger C3H1-type profile. 6 34 IPR000571 GO:0046872
Vvi4g841 304 SUPERFAMILY CCCH zinc finger 56 80 IPR036855 GO:0046872
Vvi4g841 304 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Vvi4g841 304 SMART c3hfinal6 6 33 IPR000571 GO:0046872
Vvi4g841 304 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Vvi4g841 304 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Vvi4g841 304 SUPERFAMILY CCCH zinc finger 241 265 IPR036855 GO:0046872
Vvi4g841 304 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Vvi4g841 304 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Vvi4g841 304 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Vvi4g841 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 219 IPR000571 GO:0046872
Vvi4g841 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 13 33 IPR000571 GO:0046872
Vvi4g841 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 265 IPR000571 GO:0046872
Vvi4g841 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 79 IPR000571 GO:0046872
Vvi4g841 304 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 13 293 - -
Vvi4g841 304 SUPERFAMILY CCCH zinc finger 196 222 IPR036855 GO:0046872
Vvi4g841 304 MobiDBLite consensus disorder prediction 133 171 - -
Vvi4g841 304 SUPERFAMILY CCCH zinc finger 8 35 IPR036855 GO:0046872
Vvi4g841 304 PANTHER PROTEIN PHOSPHATASE RELATED 13 293 - -
Vvi4g841 304 Gene3D - 184 266 - -
Vvi4g841 304 Gene3D - 4 89 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14787 PF00642 zf-CCCH 1.90E-10 CL0537 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g841 - - vvi:100254791 576.244