Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g844 ATGAAATGGGGTTATTGTTACTTGAGTCCTGGGGTATCATTTGTGAGGTGCCCTCAAATTTTCTCTGTAATTTCCATCACCAAGAAAATCCCGATCACACCTAAATCATACTGGTACAGTTCTTCAACCTTTAGTGATTCCATGAACTACCCAAACTCTGAGGTTCTTCACGCTAAGTTAATCAAGAATGGTTGTGTTGGTATTCGAGGGAACCATCTTCTGAATCTCTATGCGAAATCCCAGAATTTGGAACAAGCACATAAAATGTTTGAAGAAATTCCCCAAACGGATGTCTTCTCATGGACAGTTTTGATTTCGGGTTTTGCTCGAATTGGGTTGTCTGCTGATGTTCTGGGTCTATTCACCAAGATGCAGGATCAAGGTGTATGCCCCAATCAATTCACTTTGTCCATAGTTTTGAAGAGTTGTTCTTCGAATGTGAATGATTCTCGAATTGGGAAGGGAATTCATGGTTGGATTCTGAGGAATGGGCTTGATTTAGACGCTGTGTTGAACAACTCTATCCTTGATTATTATGTGAAATGCAGGTGCTTTGGATATGCAGAGAAGTTGTTTGGTCTGATGGCCGAGAAAGATACTGTGTCTTGGAATATAATGATGAGCTCCTATCTACAGATTGGAGATATGCAAAAGTCTGTTGATCTGTTTAGGCAATTGCCCGGAAAAGATGCTGCAAGTTGGAATACAATGATAGATGGGCTGATGCGAAATGGCTGTGAAAGAGTTGCCTTGGAACTTCTGTATAAGATGGTTGCAGCTGGACCTGCATTCAACAAACTCACCTTCTCCATAGCTTTGGTGTTGGCCTCTTCCTTATCAGTTTTGGGACTAGGGAAGCAGATACATACTCAGGTACTGAAAGTTGGAGTCCTTGATGATGGGTTTGTGAGGAATTCACTGATAGATATGTACTGCAAATGTGGGGAAATGGAAAAGGCGTCGGTGATTTTCAAACACTTGCCTCAAGAATCTTCAATGATGAATTCTGAAGACGTTGTTTCTGCATGTGCAAGTGCTGGGGTTCTGGAGCTTGGCAGGCAGGTCCATGGCTACATTCAGAAAATTGGACATGGACTGGATGTTTTCCTGGGTTCCTCAATCATTGACATGTATGTTAAATGTGGGAGCTTGAATGATGCTTGGTTGATCTTCAACCAAGCTAAAGATCGTAACGTTGTGTTATGGACTTCAATGATATCTGGCTGTGCTTTACATGGACAAGGAAGAGAGGCTGTTCGGCTTTTTGAGCTGATGATCAATGAGGGGATTACACCGAACGAGGTCAGCTTTGTAGGCGTTTTAACTGCCTGCAGCCATGCCGGGCTGCTTGAAGAAGGCTGCAAATATTTCAGATTGATGAGAGAAGTCTATGGCATCAGGCCTGGAGCTGAGCACTTCACCTGTATGGTTGATCTCTATGGCCGAGCTGGTCGCCTAAATGAGATAAAGGAGTTCATTCATAACAATGCCATCTCCAAGCTGAGCTCTGTATGGAGGTCTTTTCTATCTTCTTATAGGTCTCATCCACAGGACACTAAGATTTATTCATACTTAGATGAGCTAATTGGAAGGTTAAAGGAAATCGGGTATTCAACTGACGTCACACCAGTGATGCAAGATGTAGAACAAGAGCAAAGACAAGTGCTACTAGGTTATCACAGTGAAAAACTTGCCATTGCTTATGGCATCATTAGTACTGCTCCTGGAACACCGATCCGGGTCATGAAAAACCTTCGCGTTTGCATTGACTGTCACAACTTTATCAAGTATGCTTCTGAGCTCTTGGGCAGGGAAATAATCATTAGAGACATTCATCGGTTCCATCATTTTAAGCATGGGCATTGCTCCTGTGCAGACTACTGGTGA 1887 42.77 MKWGYCYLSPGVSFVRCPQIFSVISITKKIPITPKSYWYSSSTFSDSMNYPNSEVLHAKLIKNGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEDVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSYRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16608368 16610633 + Vvi4g844 Vvi4g844 785623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g844 628 Gene3D Tetratricopeptide repeat domain 372 557 IPR011990 GO:0005515
Vvi4g844 628 Pfam PPR repeat 233 261 IPR002885 -
Vvi4g844 628 Pfam PPR repeat 173 198 IPR002885 -
Vvi4g844 628 Pfam PPR repeat 305 327 IPR002885 -
Vvi4g844 628 Pfam PPR repeat 201 227 IPR002885 -
Vvi4g844 628 Pfam PPR repeat 71 93 IPR002885 -
Vvi4g844 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Vvi4g844 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Vvi4g844 628 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Vvi4g844 628 TIGRFAM PPR: pentatricopeptide repeat domain 305 327 IPR002885 -
Vvi4g844 628 TIGRFAM PPR: pentatricopeptide repeat domain 99 132 IPR002885 -
Vvi4g844 628 TIGRFAM PPR: pentatricopeptide repeat domain 436 468 IPR002885 -
Vvi4g844 628 TIGRFAM PPR: pentatricopeptide repeat domain 201 226 IPR002885 -
Vvi4g844 628 TIGRFAM PPR: pentatricopeptide repeat domain 233 261 IPR002885 -
Vvi4g844 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Vvi4g844 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Vvi4g844 628 Gene3D Tetratricopeptide repeat domain 69 153 IPR011990 GO:0005515
Vvi4g844 628 Gene3D Tetratricopeptide repeat domain 155 281 IPR011990 GO:0005515
Vvi4g844 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Vvi4g844 628 PANTHER OS07G0578800 PROTEIN-RELATED 338 610 IPR045215 GO:0003723|GO:0009451
Vvi4g844 628 PANTHER OS07G0578800 PROTEIN-RELATED 33 330 IPR045215 GO:0003723|GO:0009451
Vvi4g844 628 PANTHER OS07G0239600 PROTEIN 338 610 - -
Vvi4g844 628 PANTHER OS07G0239600 PROTEIN 33 330 - -
Vvi4g844 628 Pfam PPR repeat family 397 445 IPR002885 -
Vvi4g844 628 Pfam PPR repeat family 97 144 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g844 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - vvi:100265089 620.928
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g01150 . . . . . . . . . . . . . . Car05g00711 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009976 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 25