Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g845 ATGGAGAGGCTCGTCGTTCTTCCCTTCACTGCAGGCTGTGTGTCTTATGCCAGTGTGGCTGTGAGTGAGCAGCAGCCTAGAAGATCAAAACCTGACACAAACTCATCTACCATCAGAGCACAAGAGGAAGATCAAGAAAGCTTCTCCGATAGCATGAAGAACTCATTCAGGCTCCTGGCCCTCCCAAAGCCAAACATCTCCACCGGTTTCCATAGACTGGTGAAGGGTTTCAAGAACTTCTCTCAATTCTTTGTCCCTAAGGAAGACATGGAAGACTCGGACGAGGAGATGCAGATAGGTTTTCCAACCGATGTGAAGCACGTTACACACATAGGATGGGATGGTTCTGCAACTACAAACCCTATAAAGGGCTGGGACAACCTCATTCCACCAGAGTTGCTGTCTCTCCCTGCTGTTTCCCTGAGGCAGTTTTAG 435 48.97 MERLVVLPFTAGCVSYASVAVSEQQPRRSKPDTNSSTIRAQEEDQESFSDSMKNSFRLLALPKPNISTGFHRLVKGFKNFSQFFVPKEDMEDSDEEMQIGFPTDVKHVTHIGWDGSATTNPIKGWDNLIPPELLSLPAVSLRQF* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16612722 16613548 + Vvi4g845 Vvi4g845 785624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g845 144 Pfam P21-Rho-binding domain 98 128 IPR000095 -
Vvi4g845 144 MobiDBLite consensus disorder prediction 22 49 - -
Vvi4g845 144 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 141 - -
Vvi4g845 144 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 141 IPR044509 -
Vvi4g845 144 CDD CRIB 97 131 - -
Vvi4g845 144 SMART PBD_5 99 132 IPR000095 -
Vvi4g845 144 Gene3D CRIB domain 94 136 IPR036936 -
Vvi4g845 144 ProSiteProfiles CRIB domain profile. 99 112 IPR000095 -
Vvi4g845 144 MobiDBLite consensus disorder prediction 22 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g845 - - - vvi:100259906 293.893
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01032 Cam03g1080 Cec03g1084 Cco03g1075 Clacu03g1054 Cmu03g1642 Cre03g1342 Lsi06g00705 . . Cme02g00916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012923 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 28