Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g847 ATGGGGTTGATGTTGGAAAATGGCGTTGCAAACGACGCCGTTTATGTCCCTCCCTCCAACTTCTCCATGGTTGAAGAGAACATCTTCAGATCTGGCCTCCCCAGCCCCATCAATTTCCCCTTCCTCGAAACCCTGAATCTTCGATCCATCATATACTTGTGTCCTGAGCCATATCCGGAAGAAAACTGTAAATTTCTTCAATCTCAGAATATCCGCCTCTTCCAGTTTGGCATTGAAGGAAAGAAGGAGCCTCCTGTGGCAATGTCCACGGATACCATCTCAGAGGCTTTGAAAGTCTTAATGGATGTGAGAAATCATCCCATTCTGATCCATTGCAAACGCGGAAAGCACCGGACAGGCTGTCTTGTGGGTTGTTTGAGAAAATTGCAGAATTGGTGTTTGTCTTCTGTGGTTGAGGAGTACCAGCGCTTTGCAGGAGCAAAATCGAGGATCAACGATCTGAAGTTCATCGAGACATATGACATATTGAGTATGAGGCAAAGCCTTTACAGCATTATCTACAGGTACCAAGGGTATGGGTCGAACAAGAGGAGGTTGCTTTACAGAGGAGACGAGAATGTGCATAAGGCAAGGTTAGCTTCAATTTAG 609 45.81 MGLMLENGVANDAVYVPPSNFSMVEENIFRSGLPSPINFPFLETLNLRSIIYLCPEPYPEENCKFLQSQNIRLFQFGIEGKKEPPVAMSTDTISEALKVLMDVRNHPILIHCKRGKHRTGCLVGCLRKLQNWCLSSVVEEYQRFAGAKSRINDLKFIETYDILSMRQSLYSIIYRYQGYGSNKRRLLYRGDENVHKARLASI* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16630134 16632757 + Vvi4g847 Vvi4g847 785626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g847 202 Gene3D Protein tyrosine phosphatase superfamily 15 164 IPR029021 -
Vvi4g847 202 Pfam Tyrosine phosphatase family 15 165 IPR004861 -
Vvi4g847 202 CDD PFA-DSP_Siw14 16 161 - -
Vvi4g847 202 ProSiteProfiles Dual specificity protein phosphatase domain profile. 20 175 IPR020422 GO:0006470|GO:0008138
Vvi4g847 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 183 - -
Vvi4g847 202 ProSitePatterns Tyrosine specific protein phosphatases active site. 110 120 IPR016130 GO:0016311|GO:0016791
Vvi4g847 202 PRINTS Plant and fungal dual specificity phosphatase signature 15 32 IPR020428 GO:0016791
Vvi4g847 202 PRINTS Plant and fungal dual specificity phosphatase signature 52 65 IPR020428 GO:0016791
Vvi4g847 202 PRINTS Plant and fungal dual specificity phosphatase signature 71 85 IPR020428 GO:0016791
Vvi4g847 202 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Vvi4g847 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 183 - -
Vvi4g847 202 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 162 IPR029021 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g847 K18045 - vvi:100247948 413.69