Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g85 ATGGGTGGTTCGGGAAAATGGGTGAAAGCGCTGATAGGTCTCAAAAAGCCCGAGAAAGACGACCATGAGAAGGTGGGGGGTAAGAGCAAGAAATGGAGGCTGTGGAGGAGCTCATCAGGGGAAATGGGGTCTTCATGGAGGGGATTCAAAGGAGGGCATAGAGCTTACTCAGAGGGATCTGACTCTTCATCAGTGGGTACTGATGCTTTCACAGCTGCTGTAGCTACAGTGGTTCGAGCTCCACCCAAAGATTTTAGAGTTGTGAGGCAAGAATGGGCTGCAATCCGGATCCAGACTGCTTTTCGTGGCTTCTTGGCAAGAAGGGCTTTGAGGGCCTTGAAGGGAGTGGTTAGGCTTCAAGCTCTAGTTCGCGGCAGACAGGTCAGGAAGCAGGCTGCTGTGACACTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCCCGGGTTAGGGCTCGTCGTGTTAGAATGTCCATGGAGGGACAGGCTGTGCAGAAGTTGCTGGACGAGCGCCGCAGCCAGGCTGATCTCTTGAAAGAAGCTGAGGAAGGATGGTGTGATAGTAAGGGGACGTTGGCAGATGTTAAGACCAAGTTACAGATGAGGCAAGAGGGAGCCTTCAAGAGAGAAAGGGCAATTGCGTACTCTCTTGCTCAGAAGCAATGGAGATCAAGCCAGAATGCAAATTCCCAAACAAATGTCTCAGTGTCTTCAGTCAAGAATCACGAGCTTGATAAGAGTAGTTGGGGATGGAGTTGGTTAGAGCGTTGGATGGCGGCCAAGCCATGGGAGAACAGATTGATGGAGCAAGCCCACACTGATCCATCAGAGACAACTCCACCTTTTAAGCACTGTATGAACCCTCTCTCAGGCACCCATTCAAAATCTTCAGAACCAGGCTCAGTGAAGGTGAGAAGGAACAATGTAACTACCAGGATTTCTGCAAAACCTCCTCCAATTGGGTTAGTCACTCGGTCATCTTCAAGTCCAAGTTCTGAGTTTCAGTACGATGAAAGCTCAGCTTCATCTTCAATTTGCACATCTGCTACTCCTGTTTCTGGGAACACTAAATCAGGGTTATACTGTAATGTAGATACAAAAAGCAGTGCTGGTTCTGATCCTCCATCAGTTAATTTCTCTAAGCCGCTTTACCTTCCAACCCGAATGGATAAAGCCTCTGTGAAGGTAAGGGAAAGGGAGAATTGCTTTTATGAGTAA 1215 48.72 MGGSGKWVKALIGLKKPEKDDHEKVGGKSKKWRLWRSSSGEMGSSWRGFKGGHRAYSEGSDSSSVGTDAFTAAVATVVRAPPKDFRVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQKLLDERRSQADLLKEAEEGWCDSKGTLADVKTKLQMRQEGAFKRERAIAYSLAQKQWRSSQNANSQTNVSVSSVKNHELDKSSWGWSWLERWMAAKPWENRLMEQAHTDPSETTPPFKHCMNPLSGTHSKSSEPGSVKVRRNNVTTRISAKPPPIGLVTRSSSSPSSEFQYDESSASSSICTSATPVSGNTKSGLYCNVDTKSSAGSDPPSVNFSKPLYLPTRMDKASVKVRERENCFYE* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 912017 914578 + Vvi4g85 Vvi4g85 784864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g85 404 Gene3D - 88 138 - -
Vvi4g85 404 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 355 - -
Vvi4g85 404 SMART iq_5 112 133 IPR000048 GO:0005515
Vvi4g85 404 SMART iq_5 89 111 IPR000048 GO:0005515
Vvi4g85 404 Coils Coil 403 404 - -
Vvi4g85 404 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Vvi4g85 404 PANTHER IQ-DOMAIN 5-RELATED 1 355 - -
Vvi4g85 404 MobiDBLite consensus disorder prediction 282 313 - -
Vvi4g85 404 MobiDBLite consensus disorder prediction 270 335 - -
Vvi4g85 404 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Vvi4g85 404 MobiDBLite consensus disorder prediction 320 335 - -
Vvi4g85 404 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g85 - - - vvi:100254187 729.939
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g85 Blo01g01460 Blo12g01017 Bda01g00627 . Bpe02g01543 . . Bma01g02209 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0275 . . . . . . . . . . . . . . . . . Car01g01342 . . Cpe02g00266 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39