Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g85 ATGGGTGGTTCGGGAAAATGGGTGAAAGCGCTGATAGGTCTCAAAAAGCCCGAGAAAGACGACCATGAGAAGGTGGGGGGTAAGAGCAAGAAATGGAGGCTGTGGAGGAGCTCATCAGGGGAAATGGGGTCTTCATGGAGGGGATTCAAAGGAGGGCATAGAGCTTACTCAGAGGGATCTGACTCTTCATCAGTGGGTACTGATGCTTTCACAGCTGCTGTAGCTACAGTGGTTCGAGCTCCACCCAAAGATTTTAGAGTTGTGAGGCAAGAATGGGCTGCAATCCGGATCCAGACTGCTTTTCGTGGCTTCTTGGCAAGAAGGGCTTTGAGGGCCTTGAAGGGAGTGGTTAGGCTTCAAGCTCTAGTTCGCGGCAGACAGGTCAGGAAGCAGGCTGCTGTGACACTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCCCGGGTTAGGGCTCGTCGTGTTAGAATGTCCATGGAGGGACAGGCTGTGCAGAAGTTGCTGGACGAGCGCCGCAGCCAGGCTGATCTCTTGAAAGAAGCTGAGGAAGGATGGTGTGATAGTAAGGGGACGTTGGCAGATGTTAAGACCAAGTTACAGATGAGGCAAGAGGGAGCCTTCAAGAGAGAAAGGGCAATTGCGTACTCTCTTGCTCAGAAGCAATGGAGATCAAGCCAGAATGCAAATTCCCAAACAAATGTCTCAGTGTCTTCAGTCAAGAATCACGAGCTTGATAAGAGTAGTTGGGGATGGAGTTGGTTAGAGCGTTGGATGGCGGCCAAGCCATGGGAGAACAGATTGATGGAGCAAGCCCACACTGATCCATCAGAGACAACTCCACCTTTTAAGCACTGTATGAACCCTCTCTCAGGCACCCATTCAAAATCTTCAGAACCAGGCTCAGTGAAGGTGAGAAGGAACAATGTAACTACCAGGATTTCTGCAAAACCTCCTCCAATTGGGTTAGTCACTCGGTCATCTTCAAGTCCAAGTTCTGAGTTTCAGTACGATGAAAGCTCAGCTTCATCTTCAATTTGCACATCTGCTACTCCTGTTTCTGGGAACACTAAATCAGGGTTATACTGTAATGTAGATACAAAAAGCAGTGCTGGTTCTGATCCTCCATCAGTTAATTTCTCTAAGCCGCTTTACCTTCCAACCCGAATGGATAAAGCCTCTGTGAAGGTAAGGGAAAGGGAGAATTGCTTTTATGAGTAA 1215 48.72 MGGSGKWVKALIGLKKPEKDDHEKVGGKSKKWRLWRSSSGEMGSSWRGFKGGHRAYSEGSDSSSVGTDAFTAAVATVVRAPPKDFRVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQKLLDERRSQADLLKEAEEGWCDSKGTLADVKTKLQMRQEGAFKRERAIAYSLAQKQWRSSQNANSQTNVSVSSVKNHELDKSSWGWSWLERWMAAKPWENRLMEQAHTDPSETTPPFKHCMNPLSGTHSKSSEPGSVKVRRNNVTTRISAKPPPIGLVTRSSSSPSSEFQYDESSASSSICTSATPVSGNTKSGLYCNVDTKSSAGSDPPSVNFSKPLYLPTRMDKASVKVRERENCFYE* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 912017 914578 + Vvi4g85 Vvi4g85 784864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g85 404 Gene3D - 88 138 - -
Vvi4g85 404 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 355 - -
Vvi4g85 404 SMART iq_5 112 133 IPR000048 GO:0005515
Vvi4g85 404 SMART iq_5 89 111 IPR000048 GO:0005515
Vvi4g85 404 Coils Coil 403 404 - -
Vvi4g85 404 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Vvi4g85 404 PANTHER IQ-DOMAIN 5-RELATED 1 355 - -
Vvi4g85 404 MobiDBLite consensus disorder prediction 282 313 - -
Vvi4g85 404 MobiDBLite consensus disorder prediction 270 335 - -
Vvi4g85 404 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Vvi4g85 404 MobiDBLite consensus disorder prediction 320 335 - -
Vvi4g85 404 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g85 - - vvi:100254187 729.939