Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g850 ATGTGTGGCATTTATGGTTTGATTAGGTTTCTTCCCCTTCCGATCTTGCTCAAAGTTTTGGGGCTGAAGTTCACTATCAAACTTGTGCTCCAACACATTCACCAGTGGGTTTCGAATTTGCCACAGAATTCTCTACAGAAGCTTCTGCTAAAAACTATGTGGATGCATCACATTCCAGAAGAACAGAAAGGCACATACCCTTCCATGGGAATGGGAAGAACTTCAGAAGATGGATACAATTGGAGAAAATATGGGCAAAAAAGTATGAAAGGTAGTGAACATACAAGGAGCTATTATAAATGTACTCATCTAGATTGTCCAATGAGAAAAAAGGTACAACAATCACATGATGGTCAAATAACAGAAATTATCTATAAGGGTGGTCATAACCACCCAAAACCACTGCCTAGTCGTCGATCAGCTCTTGGATCCACACTTCCATTTAATGAGATGTCAGGTTTGGGGGAAGGTGGTGGATCTAGTGTCAGAGTTGAAGGAACCCCAGATCTTTCCTTAACAGTTGCTAGTCAAGATGATGGTGAAGATGGGGCTACTCAAGGAAGCATATCACTTGGAGATGATGCTGATGATGAAGGTTCTCAGTCAAAAAAAAGGAAGAAAGAGAATTGTATGACTGAAAAAAATTTGGCATCCAGGACTGTACGTGAACCAAGGGTTGTTGTCCAAGTAGAGTGTGAATCGGACGTCCTTAATGATGGATATCGCTGGCGAAAGTATGGACAAAAAGTCGTCAAAGGCAATCTGCATCCTAGGAATTACTACAAGTGCACAAGCACTGGATGCTCAGTGAGGAGGCATGTGGAAAGAGCTTCCAACAATCAGAAATCCATAATTGCGACATATGAAGGAAAACACAATCATGAAGTGCCTGCAGCCAGAAACAGCAGTCATGTGAATTCAAGTGGTGGAAATTTGCCTTCAGCTGCTCCTGGTGCTCAATCAGCACTGGCTTTGCACAGGAATGCTAATGCCCCAAGGCCAGAAGCACTACTTCAAGATCTTGTCCCCCACTTTGACATAAAACCTGAATTCAGCAATCAGTATATAAGGCACAGTATGCTTGGGAACTTTGCTAATGATATGAAATTTGGTCCTTCCTCCCTTTATTCAATGCAGTTCCCTCCCCTGCAAAATACCATGCTTTATGCTCCTTTTGGACTGGATTCTAATAATGCTGATCCCCACCAACCTGGTTCAGTTGCTCCAGTAGCCCCAGATTTCCCAATTTCATTGCCATTGAATCTCCCCCCACCTGCAAATCTGGGTCTGCCTGGCTTTGACTTCAACAGTCATGGAAACCCGATTGGTCAAGTTGAGCCATATTTCGTGGGGCAGCAGCTTCAGGAGAACGATATGAGGTTCCTCCATCCTAAAGAGGAGAAGAAGGATGACATTGGTGATGCAACTACATCATGTTCATCATCAACAATATATCACTAG 1461 43.12 MCGIYGLIRFLPLPILLKVLGLKFTIKLVLQHIHQWVSNLPQNSLQKLLLKTMWMHHIPEEQKGTYPSMGMGRTSEDGYNWRKYGQKSMKGSEHTRSYYKCTHLDCPMRKKVQQSHDGQITEIIYKGGHNHPKPLPSRRSALGSTLPFNEMSGLGEGGGSSVRVEGTPDLSLTVASQDDGEDGATQGSISLGDDADDEGSQSKKRKKENCMTEKNLASRTVREPRVVVQVECESDVLNDGYRWRKYGQKVVKGNLHPRNYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHEVPAARNSSHVNSSGGNLPSAAPGAQSALALHRNANAPRPEALLQDLVPHFDIKPEFSNQYIRHSMLGNFANDMKFGPSSLYSMQFPPLQNTMLYAPFGLDSNNADPHQPGSVAPVAPDFPISLPLNLPPPANLGLPGFDFNSHGNPIGQVEPYFVGQQLQENDMRFLHPKEEKKDDIGDATTSCSSSTIYH* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16664475 16666741 - Vvi4g850 Vvi4g850 785629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g850 486 ProSiteProfiles WRKY domain profile. 232 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 MobiDBLite consensus disorder prediction 464 486 - -
Vvi4g850 486 SUPERFAMILY WRKY DNA-binding domain 230 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 164 473 - -
Vvi4g850 486 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 48 158 - -
Vvi4g850 486 Gene3D WRKY domain 222 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 Gene3D WRKY domain 68 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 ProSiteProfiles WRKY domain profile. 76 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 MobiDBLite consensus disorder prediction 166 184 - -
Vvi4g850 486 MobiDBLite consensus disorder prediction 196 213 - -
Vvi4g850 486 MobiDBLite consensus disorder prediction 125 214 - -
Vvi4g850 486 Pfam WRKY DNA -binding domain 76 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 SMART WRKY_cls 237 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 SMART WRKY_cls 75 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g850 486 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 164 473 IPR044810 GO:0003700
Vvi4g850 486 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 158 IPR044810 GO:0003700
Vvi4g850 486 SUPERFAMILY WRKY DNA-binding domain 74 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14789 PF03106 WRKY 1.00E-22 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g850 K18835 - vvi:100253049 844.343