Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g850 | ATGTGTGGCATTTATGGTTTGATTAGGTTTCTTCCCCTTCCGATCTTGCTCAAAGTTTTGGGGCTGAAGTTCACTATCAAACTTGTGCTCCAACACATTCACCAGTGGGTTTCGAATTTGCCACAGAATTCTCTACAGAAGCTTCTGCTAAAAACTATGTGGATGCATCACATTCCAGAAGAACAGAAAGGCACATACCCTTCCATGGGAATGGGAAGAACTTCAGAAGATGGATACAATTGGAGAAAATATGGGCAAAAAAGTATGAAAGGTAGTGAACATACAAGGAGCTATTATAAATGTACTCATCTAGATTGTCCAATGAGAAAAAAGGTACAACAATCACATGATGGTCAAATAACAGAAATTATCTATAAGGGTGGTCATAACCACCCAAAACCACTGCCTAGTCGTCGATCAGCTCTTGGATCCACACTTCCATTTAATGAGATGTCAGGTTTGGGGGAAGGTGGTGGATCTAGTGTCAGAGTTGAAGGAACCCCAGATCTTTCCTTAACAGTTGCTAGTCAAGATGATGGTGAAGATGGGGCTACTCAAGGAAGCATATCACTTGGAGATGATGCTGATGATGAAGGTTCTCAGTCAAAAAAAAGGAAGAAAGAGAATTGTATGACTGAAAAAAATTTGGCATCCAGGACTGTACGTGAACCAAGGGTTGTTGTCCAAGTAGAGTGTGAATCGGACGTCCTTAATGATGGATATCGCTGGCGAAAGTATGGACAAAAAGTCGTCAAAGGCAATCTGCATCCTAGGAATTACTACAAGTGCACAAGCACTGGATGCTCAGTGAGGAGGCATGTGGAAAGAGCTTCCAACAATCAGAAATCCATAATTGCGACATATGAAGGAAAACACAATCATGAAGTGCCTGCAGCCAGAAACAGCAGTCATGTGAATTCAAGTGGTGGAAATTTGCCTTCAGCTGCTCCTGGTGCTCAATCAGCACTGGCTTTGCACAGGAATGCTAATGCCCCAAGGCCAGAAGCACTACTTCAAGATCTTGTCCCCCACTTTGACATAAAACCTGAATTCAGCAATCAGTATATAAGGCACAGTATGCTTGGGAACTTTGCTAATGATATGAAATTTGGTCCTTCCTCCCTTTATTCAATGCAGTTCCCTCCCCTGCAAAATACCATGCTTTATGCTCCTTTTGGACTGGATTCTAATAATGCTGATCCCCACCAACCTGGTTCAGTTGCTCCAGTAGCCCCAGATTTCCCAATTTCATTGCCATTGAATCTCCCCCCACCTGCAAATCTGGGTCTGCCTGGCTTTGACTTCAACAGTCATGGAAACCCGATTGGTCAAGTTGAGCCATATTTCGTGGGGCAGCAGCTTCAGGAGAACGATATGAGGTTCCTCCATCCTAAAGAGGAGAAGAAGGATGACATTGGTGATGCAACTACATCATGTTCATCATCAACAATATATCACTAG | 1461 | 43.12 | MCGIYGLIRFLPLPILLKVLGLKFTIKLVLQHIHQWVSNLPQNSLQKLLLKTMWMHHIPEEQKGTYPSMGMGRTSEDGYNWRKYGQKSMKGSEHTRSYYKCTHLDCPMRKKVQQSHDGQITEIIYKGGHNHPKPLPSRRSALGSTLPFNEMSGLGEGGGSSVRVEGTPDLSLTVASQDDGEDGATQGSISLGDDADDEGSQSKKRKKENCMTEKNLASRTVREPRVVVQVECESDVLNDGYRWRKYGQKVVKGNLHPRNYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHEVPAARNSSHVNSSGGNLPSAAPGAQSALALHRNANAPRPEALLQDLVPHFDIKPEFSNQYIRHSMLGNFANDMKFGPSSLYSMQFPPLQNTMLYAPFGLDSNNADPHQPGSVAPVAPDFPISLPLNLPPPANLGLPGFDFNSHGNPIGQVEPYFVGQQLQENDMRFLHPKEEKKDDIGDATTSCSSSTIYH* | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 16664475 | 16666741 | - | Vvi4g850 | Vvi4g850 | 785629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g850 | 486 | ProSiteProfiles | WRKY domain profile. | 232 | 297 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | MobiDBLite | consensus disorder prediction | 464 | 486 | - | - | |
Vvi4g850 | 486 | SUPERFAMILY | WRKY DNA-binding domain | 230 | 297 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 164 | 473 | - | - | |
Vvi4g850 | 486 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 48 | 158 | - | - | |
Vvi4g850 | 486 | Gene3D | WRKY domain | 222 | 298 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | Gene3D | WRKY domain | 68 | 135 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | ProSiteProfiles | WRKY domain profile. | 76 | 134 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | MobiDBLite | consensus disorder prediction | 166 | 184 | - | - | |
Vvi4g850 | 486 | MobiDBLite | consensus disorder prediction | 196 | 213 | - | - | |
Vvi4g850 | 486 | MobiDBLite | consensus disorder prediction | 125 | 214 | - | - | |
Vvi4g850 | 486 | Pfam | WRKY DNA -binding domain | 76 | 132 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | Pfam | WRKY DNA -binding domain | 238 | 295 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | SMART | WRKY_cls | 237 | 296 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | SMART | WRKY_cls | 75 | 133 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi4g850 | 486 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 164 | 473 | IPR044810 | GO:0003700 | |
Vvi4g850 | 486 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 48 | 158 | IPR044810 | GO:0003700 | |
Vvi4g850 | 486 | SUPERFAMILY | WRKY DNA-binding domain | 74 | 134 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14789 | PF03106 | WRKY | 1.00E-22 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g850 | K18835 | - | vvi:100253049 | 844.343 |