Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g86 ATGACAGGTTCGGCCTGCCTGATCAGATGCCCACAGCTCATGATCTCCACCACAAACTCCCCTATCTTGATCAGGCAAAAGGCAATGAGGTTTTATACACTCACCCCATTAATTGGGAGAAACATCCACACAAGTAGAGATAGGAGGTTATGTTCTCCCAAAGGGCTCCTGGATCTGGATGGCACCAGGGGTTCTAGCAAAAGATCCAAAAAGTTTCCCAGAACCGGACAAGTTCAGCTAGAGAGGTTTGATCCAAATTGTGAGGAGAAGAAACAAAGGCATCTTTATACTTACATACCCTTTGGAATTGGGCCTCGAGCATGCCTAGGCCAGAAGTTCTCCTTGCTAGAAATAAAGCTCACACTGATTCATCTATACCAAAACCATGTATTTTCACCATTCCCCCAAGATTGA 414 45.17 MTGSACLIRCPQLMISTTNSPILIRQKAMRFYTLTPLIGRNIHTSRDRRLCSPKGLLDLDGTRGSSKRSKKFPRTGQVQLERFDPNCEEKKQRHLYTYIPFGIGPRACLGQKFSLLEIKLTLIHLYQNHVFSPFPQD* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 914900 915869 - Vvi4g86 Vvi4g86 784865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g86 137 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 101 110 IPR017972 GO:0005506|GO:0016705
Vvi4g86 137 PANTHER THROMBOXANE-A SYNTHASE 26 131 - -
Vvi4g86 137 PANTHER CYTOCHROME P450 FAMILY PROTEIN 26 131 - -
Vvi4g86 137 SUPERFAMILY Cytochrome P450 81 135 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g86 137 Pfam Cytochrome P450 67 135 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g86 137 Gene3D Cytochrome P450 26 137 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g86 K20771 CYP711A1; carlactone C-19 oxidase [EC:1.14.-.-] - vvi:100249079 233.032
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g86 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01419 . . . . . . . . Bpe04g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071616 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1