Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g865 ATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATGTGTCCCGGAATGATCTGAAAGAGCTGTTGAGGAAAGCGGATGCTGGTGAGGAAGGTCTGAAGCTGTCCCCTTGGTTCAGACTGGTGGTCGACAACTTCCTCTTCAAGTGGTGGGACCATGTTGAGAAGGGGACCCTCCTTGAAGCTGCAGATATGAAAACCATTCACAAGTTGACTTGA 681 45.96 MDAVQRRLMFEDECILVDENDRIVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIPAEDAPVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADVKYVSRNDLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTLLEAADMKTIHKLT* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16801743 16809442 - Vvi4g865 Vvi4g865 785644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g865 226 Pfam NUDIX domain 44 182 IPR000086 -
Vvi4g865 226 PIRSF Isopentenyldiphpt_isom 1 221 IPR011876 GO:0004452|GO:0008299
Vvi4g865 226 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 1 225 - -
Vvi4g865 226 SUPERFAMILY Nudix 13 208 IPR015797 -
Vvi4g865 226 TIGRFAM IPP_isom_1: isopentenyl-diphosphate delta-isomerase 14 196 IPR011876 GO:0004452|GO:0008299
Vvi4g865 226 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE I-LIKE 1 225 - -
Vvi4g865 226 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 225 - -
Vvi4g865 226 ProSiteProfiles Nudix hydrolase domain profile. 43 195 IPR000086 -
Vvi4g865 226 CDD IPP_Isomerase 11 198 IPR011876 GO:0004452|GO:0008299
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g865 K01823 idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] - vvi:100241072 466.077
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00714 . . . . . . . . . Cla03g01017 Cam03g1069 Cec03g1070 Cco03g1061 Clacu03g1040 Cmu03g1630 Cre03g1331 Lsi06g00693 . . Cme02g00907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001962 2 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 2 3 2 2 3 2 2 2 2 2 3 2 1 66