Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g87 ATGCTTGAATTTTTCTTAAGAGATTGGGAATGGTCCCTCCAAGGTTTGATACAGATTGGGGTGTCCTTCATAAGGACACCCATGGCACCAGCCTTCTTCACAGTGTTGGCTATGCTAGGAGGACTTTTGGGCTACTTGTATGAACCCTATTGGAGGGTGAGAAGGGTACCAGGTCCACCAGTCTTCCCTCTTGTTGGGCACCTCCCCTTGATGGCCAAGTATGGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATTCCCTCTGCCATCTCAGCATCCCCTCTCCACCAAAAGGGTCTCTTCTTCACCAGGGATGCAAGGTGGTCAACAATGAGAAACACCATAATATCAGTCTACCAGCAATCTCACCTAGCCAACCTGGTGCCAACCATGCAAGCATTCATTGAACCAGCCTTTCGAAATCTCCCGTCTTCTGAAGAGGAAGATATCACTTTTTCCAATTTGTCCCTCAAACTGGCCACTGATGTAATTGGGCAAGCTGCATTTGGGGTTCATTTTGGTCTCTCCAAACCACCATCCAGCAATGAAGTTAAGAACAGTGATGAAGTATCAGAGTTCATCAATCAACATATTTACTCTACCACAAATCTTAAGATGGATCTATCAGGATCTTTCTCAATTATACTAGGCCTACTTGTCCCCATTCTCCAAAAACCAGTTCAACATATCCTTAAGAGAATACCTGGGACGATGGACTGGAAAATTTACCAGACTAACAAGAAACTGAGCAGCAGGCTTGATGAGATTGTTGCAAAGAGAATGAAGGACAAGGATAGAGGTTCCAAGGACTTCTTGTCTCTCATATTGAATGCAAGGGAATCAGAGAAAGCCATGAAGAATATTTTCACCTCAGACTACCTTAATGCAGTTACTTATGAACACCTACTTGCTGGGTCTGCAACAACATCCTTCACATTGTCTTCAACTATCTATCTGATTGCCGAGCATCCAGAAGTGGAGAAGAAGTTGCTTGCAGAGATTGACGGGTTCGGTCCGCCTGATCAGATGCCAACAGCTCATGATCTCCAGCACAAATTCCCCTATCTTGATCAGGCAAAGTCTCTTGCAATGAGGTTTTATACAGTTTCCCCATTAGTTGCAAGAGAAACATCTGCAGAAGTAGAGATTGGAGGCTATGTTCTTCCCAAGGGCACATGGATCTGGTTGGCACCTGGGGTTCTAGCAAAAGATCCAAAAAATTTCCCGGAACCAGACAAGTTCAAGCCAGAGAGGTTTGACCCAAATTGTGAGGAGGAGAAACAAAGGCATCCTTATGCTCTCATACCCTTTGGAATTGGTCCTCGAGCATGTCTAGGCCAGAAGTTCTCCTTACAAGAAGTAAAGCTTTCGCTGATTCATCTATACCAAAGATATGTCTTTCGCCATTCCCCAAACATGGAGAAACCTCTGGAACTTGAGTATGGCATAATTCTCAACTTCAAACATGCTGTCAAGCTCAGAGCCATCAAACGACATCCATGA 1617 44.4 MLEFFLRDWEWSLQGLIQIGVSFIRTPMAPAFFTVLAMLGGLLGYLYEPYWRVRRVPGPPVFPLVGHLPLMAKYGHDVFSVLAKKYGPIFRFHVGRQPLVIVADAELCREVGIKKFKDIPNRSIPSAISASPLHQKGLFFTRDARWSTMRNTIISVYQQSHLANLVPTMQAFIEPAFRNLPSSEEEDITFSNLSLKLATDVIGQAAFGVHFGLSKPPSSNEVKNSDEVSEFINQHIYSTTNLKMDLSGSFSIILGLLVPILQKPVQHILKRIPGTMDWKIYQTNKKLSSRLDEIVAKRMKDKDRGSKDFLSLILNARESEKAMKNIFTSDYLNAVTYEHLLAGSATTSFTLSSTIYLIAEHPEVEKKLLAEIDGFGPPDQMPTAHDLQHKFPYLDQAKSLAMRFYTVSPLVARETSAEVEIGGYVLPKGTWIWLAPGVLAKDPKNFPEPDKFKPERFDPNCEEEKQRHPYALIPFGIGPRACLGQKFSLQEVKLSLIHLYQRYVFRHSPNMEKPLELEYGIILNFKHAVKLRAIKRHP* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 915979 921064 - Vvi4g87 Vvi4g87 784866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g87 538 PANTHER CYTOCHROME P450 FAMILY PROTEIN 27 536 - -
Vvi4g87 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 475 484 IPR017972 GO:0005506|GO:0016705
Vvi4g87 538 Pfam Cytochrome P450 57 518 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 SUPERFAMILY Cytochrome P450 50 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS P450 superfamily signature 342 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS P450 superfamily signature 473 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS P450 superfamily signature 482 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 331 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 351 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 435 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 472 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PRINTS E-class P450 group I signature 482 505 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 Gene3D Cytochrome P450 46 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g87 538 PANTHER THROMBOXANE-A SYNTHASE 27 536 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g87 K20771 - vvi:100243924 1026.93