Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g872 ATGGCGGCGTCCTTCCCTTCGCCCATCATCTGCAAAGCCACCACCAACAACAACCATCCCCACGCGCTCGATTCTTTCCACGTGCGACGTGCCGCTGAGATCGCCGACAAATCTGCCGGATTCACGTCGCCGCACCCCAACTTCGGCTGCGTGATCGCCACAGCCGGGAAAGTCGTCGGGGAGGGCTACCTCTACGCTCAAGGAACTAAGCCGGCGGAGGTCCAGGCGGTGGAGGCCGCCGGCGAGTTGTGCAGAGGCGCCACTGCTTATCTCAACATGGAGCCCGGCGATTGTCACGGTGACCGTACGGCGGTCTCTGCTCTTGTCAAGGCAGGAATTACACGAGCTGTTGTTGGGATCAGGCATCCTTTGCAACATCTTCGCAGCCATGCTCTACGGGCAATGAGGAGTGAAGGACTGCAGGTGGATGTTCTTGGAGAGGATCTGAAAAGTAAAATTGTTGAGGAAGCTTTAAAATCGTGCCTCATCGTCAATGCTCCTTTGATATATAGAGCTGCTTCTCGAGTTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTAGTAGTGGGCATGCGTCATGGATAAGCAGCAAAGAATCTAGGTATCGAGTGTTTGAACTGCGGGGTAGAAGTGATGCCATAGTTGTGGGAGGAAACACTGTGCGCAAAGACAATCCACGGCTAACTGCAAGACATGGAGGTGGACACGTGCCCATTCGGATTGTAATGTCACGGACACTTAATCTTCCTGAGGTAGCCAATCTTTGGGATGTATCAAGTGTACCTACTATAGTTGTAACACAAAGAGGTGCAAGGAAGAGTTTCCAGAAATTTCTTGCTTCAAAAGGTGTTGAAGTAGTTGAATTTGACATCCTAAACACTAGAGATGTTATGGAATATTTTTATGATCGTGGGTACCTTTCAATTTTGTGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGCATCATACACAAGGTATTTGCATTTGTTGCCCCTAAAATTATAGGTGGAAAGAATGCACCAACTCCTGTTGGTGAACTGGGAATGGTTGAGATGACGCAAGCACTAGATTTAATCGATTTTTCCTATGAGCAGATTGGACCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTTCCTGATCCTACTCCTGTTATCCCATCAGTGGATGAAACTTATGCAATTGATCCTTCTGTTACTCCTTATGAATCAATCATCATATTCTTTTATAAAACATGGGATCTTTATGGAGCTTTTTCAAACTTCTCTCCTCACCCTATACAAATGCCTGATGAAAATGGTGATTATCAGACCTGGTCAAGCGTAGAGCATTATTACCAGGCACACAAGTTTGTTGGGGTTAATGACCCTGTACCAAGAGATTTTGTCGAGGACATAAAATCTGCAAAAAGTCCTGAGGAAGCAGCAAGAATGGGAAGGACAATACAGAGGCAGCATCCTGATCTGGTAAGATCTGATTGGGACGCTGTCAAGATTGATGTCATGTACAGGGCCTTGAAATGCAAATTTTCAATTTATCCTCATTTGAATTCTATGCTGGTCTCTACTGCTGGGTCAGTTCTCGTTGAAGCTTCCCCACATGATCTCTTCTGGGGCGGAGGTCGGGATGGAGAAGGCCTAAATTATCTGGGTAGGCTTCTCATGCAGTTGAGGTCAGAATTCCTAGGCGAGTCCTTAACATCAAGTGAGAGCTCTTTCCTAGCTCTATAA 1761 46.73 MAASFPSPIICKATTNNNHPHALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCHGDRTAVSALVKAGITRAVVGIRHPLQHLRSHALRAMRSEGLQVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKESRYRVFELRGRSDAIVVGGNTVRKDNPRLTARHGGGHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLIDFSYEQIGPDMLISGFLQPFPDPTPVIPSVDETYAIDPSVTPYESIIIFFYKTWDLYGAFSNFSPHPIQMPDENGDYQTWSSVEHYYQAHKFVGVNDPVPRDFVEDIKSAKSPEEAARMGRTIQRQHPDLVRSDWDAVKIDVMYRALKCKFSIYPHLNSMLVSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESLTSSESSFLAL* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16994788 17002116 + Vvi4g872 Vvi4g872 785651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g872 586 Gene3D Cytidine Deaminase, domain 2 12 152 - -
Vvi4g872 586 TIGRFAM ribofla_fusion: conserved hypothetical protein 417 570 IPR012816 -
Vvi4g872 586 Gene3D Dihydrofolate Reductase, subunit A 169 385 IPR024072 -
Vvi4g872 586 Pfam RibD C-terminal domain 179 381 IPR002734 GO:0008703|GO:0009231
Vvi4g872 586 Gene3D - 410 577 IPR037238 -
Vvi4g872 586 SUPERFAMILY YbiA-like 405 573 IPR037238 -
Vvi4g872 586 TIGRFAM ribD_Cterm: riboflavin-specific deaminase C-terminal domain 176 382 IPR011549 GO:0008703|GO:0009231|GO:0050661
Vvi4g872 586 CDD Riboflavin_deaminase-reductase 29 139 - -
Vvi4g872 586 SUPERFAMILY Cytidine deaminase-like 24 142 IPR016193 GO:0003824
Vvi4g872 586 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRR, CHLOROPLASTIC 4 405 - -
Vvi4g872 586 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 22 143 IPR002125 -
Vvi4g872 586 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 4 405 - -
Vvi4g872 586 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 28 381 IPR004794 GO:0008835|GO:0009231
Vvi4g872 586 SUPERFAMILY Dihydrofolate reductase-like 176 383 IPR024072 -
Vvi4g872 586 Pfam NADAR domain 418 571 IPR012816 -
Vvi4g872 586 CDD NADAR 416 569 IPR012816 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g872 K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] - vvi:100264997 1177.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01013 Cam03g1067 Cec03g1064 Cco03g1059 Clacu03g1038 Cmu03g1628 Cre03g1329 Lsi06g00691 . Chy02g00677 Cme02g00904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003622 1 2 1 1 1 1 2 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 3 2 2 2 2 5 1 47