Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g873 ATGGGGTCCTGCTTGTCTGCTGAAAGCAGTCGCCCTCTCCCCAGTTCGCCCTCGGGTTCTTTAGGGGTCAGGAGGAGGAAGAACTCCAAGAGACGACTGGGGTCTCGGACTTCCTCCTTCGACTCCAGGAGGGAAGAACAATTGCATAAGATTCCAGGGCGAATGTTCCTGAATGGGGCGAGTGATTTCGCCTCTTTGTTTACACAGCAGGGCAAGAAAGGAACCAACCAGGATGCCATGATTGTTTGGGAGAATTTTGGTTCAAGAACAGACACGGTTTTCTGTGGCGTTTTTGATGGCCATGGTCCATATGGTCATATGGTTGCAAAGAGGGTGAGGGATTCCCTTCCCCTAAAACTGAGTGCACACTGGGAAGTCAATATCAATGAGGATGTACTCAAAGAGATCAGCCTTAACACCACCGGAAGCATGAACTCCGAAGATACTGCCTTCATATCTGCCGATGAGGAATCCAGGCCCTCTATTGATCTTGAAGAAACAGAAAAGCAGCCTGAGATCTTTCAGGCACTGAAAGAATCATTTCTGAAGGCTTTCAAAGTCATGGACAGGGAGCTGAGAATGCATACAAATATAGATTGCTTCTGTAGTGGGACAACAGCGGTTACTCTGGTCAAGCAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGGGCTGTATTGGGTACCAGAGATAAGGACGGTTATCTTGTTGCCATTCAGTTGACCGTCGATCTCAAACCAAATCTTCCAGGGGAAGCAGAGAGAATTCGAAGATTCAAAGGGCGTGTTTTTGCCCTTCAGGATGAACCTGAGGTTGCCAGAGTCTGGCTGCCAAACAATGATTCCCCTGGTCTTGCCATGGCCCGGGCTTTCGGAGATTTCTGCCTCAAGGATTTTGGTCTGATCTCTGTGCCTGAAATTTCTTATCGGCGCCTCTCTGAGAAGGATGAATTTGTCGTCTTGGCTACAGATGGGGTCTGGGATGTGCTCTCCAACAAAGAAGTGGTAGACATTGTAGCTTCGGCCTCATCGCGTTCCACTGCAGCTCGAACCCTGGTTGAGACTGCAGTAAGAGCTTGGAGGCTCAAATACCCAACTTCCAAAGTTGATGACTGTGCTGTAGTTTGCCTCTTCCTCAATTCCAACACAAACAATTTTTCTACTGCTTCCACCAAATCCAAAGAGCAGGTGACACCATTGGAACAAACGGACGCTGGCATTGAGAAAGATCTCTTAGGCCCGACTGGATTGGACCGCTCAGGAACTTCAGGCATAGAATGGTCTGCTCTTGAGGGAGTGTCTCGGGTAAACACCCTTCTGACTCTGCCAAGGTTTGTGCCTGGAAAAGATGACAAAAAAGTCTCTGGAAAAACCTCCTAA 1386 48.7 MGSCLSAESSRPLPSSPSGSLGVRRRKNSKRRLGSRTSSFDSRREEQLHKIPGRMFLNGASDFASLFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGHGPYGHMVAKRVRDSLPLKLSAHWEVNINEDVLKEISLNTTGSMNSEDTAFISADEESRPSIDLEETEKQPEIFQALKESFLKAFKVMDRELRMHTNIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRDKDGYLVAIQLTVDLKPNLPGEAERIRRFKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEISYRRLSEKDEFVVLATDGVWDVLSNKEVVDIVASASSRSTAARTLVETAVRAWRLKYPTSKVDDCAVVCLFLNSNTNNFSTASTKSKEQVTPLEQTDAGIEKDLLGPTGLDRSGTSGIEWSALEGVSRVNTLLTLPRFVPGKDDKKVSGKTS* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17021548 17026738 + Vvi4g873 Vvi4g873 785652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g873 461 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 426 - -
Vvi4g873 461 SMART PP2C_4 52 379 IPR001932 -
Vvi4g873 461 PANTHER ALPHABET, ISOFORM E-RELATED 1 426 - -
Vvi4g873 461 Gene3D - 61 384 IPR036457 -
Vvi4g873 461 ProSiteProfiles PPM-type phosphatase domain profile. 63 381 IPR001932 -
Vvi4g873 461 SUPERFAMILY PP2C-like 63 383 IPR036457 -
Vvi4g873 461 Pfam Protein phosphatase 2C 150 360 IPR001932 -
Vvi4g873 461 CDD PP2Cc 63 381 IPR001932 -
Vvi4g873 461 MobiDBLite consensus disorder prediction 1 23 - -
Vvi4g873 461 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g873 - - vvi:100246183 859.751