Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g875 ATGCTTTTTAGCTTTGTGGTATTCACTGAAGCAGCCCCTAAAGGGTCTCTCATCACACACCTTCCTGGGTTCAATGGAATTTTCCCTTCCAAGCACTACTCAGGTTATGTGGACATAGGAGGTGAACCTGCCAAGAATCTGTTTTACTACTTTGTTGTATCCGAAAGAAACCCAGCGAAGGATCCTCTTGTTCTATGGCTGAATGGTGGCCCAGGCTGCTCTAGCTTTGATGGTTTTGTGTATGAACATGGACCTTTCAATTTTGAAGCAGGAAAGACACCCATCAGCCTGCCCACTTTGCACCTCAACCCATACAGTTGGTCCAAGGTTTCAAGCATGATATATTTGGACTCTCCTACTGGGGTTGGGTTTTCCTTCTCGAAAAACACATGGCAATACAAAACTGGAGACGTTCAAACTGCCTCTGATACACATGAGTTTCTCCTCAGGTGGTTCAAAGAATTCCCGGAATTCATCACCAATCCATTTTATGTGTCTGGAGAGTCTTATGCTGGAGTTTATGTGCCAACTCTTTCTGCTGCAATAGTGAAAGGCATCAAAAGTGGTGCAAAGCCTACTATCAACTTCAAGGGCTATTTGGTGGGAAATGGGGTCACAGACATGGAGTTTGATGCCAATGCCCTAGTCCCATTTACACATGGGATGGGCCTTATATCAAGTGAGATGTTTGAGAAAGCAAGAGATAACTGTGGAGGAAACTATTACTCAAATGAAAGTAAAAGCTGCATAGAAGAGCTGAACAAAATCTATAATGCCATTTCTGGCCTCAACCAATACGATATCCTTGAACCTTGCTATCATAGACCGACGAAGAAAGGTGAAGAAACTGGAAATACAACACTACCACTTAGCTTCAAGCAGTTAGGAGCTACTAACCGGCCACTTCCAGTGAGGACGAGGATGTTTGGCCGCGCCTGGCCTTTTCGTGCACCAGTTAAAGATGGCATTCTCCCTCTGTGGACTGAATTAATCAAGCAAAACCCAATTCCTTGCACGGATGATCAAGTAGCAAGTGCTTGGTTGAATGACAAAGGAGTTAGGACTGCAATTCATGCCCAACAGAAAGATGTGATTGGGGAGTGGGAAATATGCACTGGCAGACTACACTATTCCTCTGACTCTGGGAGTATGCTTCAGTACCACAAAAACCTAACTGCCAAGGGATACCGAGCACTTATATACAGTGGGGATCATGATATGTGTGTGCCATTCACTGGGAGCGAAGCATGGACCAGGTCACTAGGATATAAGATTATGGATGAATGGAGGGCTTGGATTTCCAACGACCAAGTTGCCGGGTACACACAAGGATATGAACATGGCCTCACCTTTCTCACCATCAAGGGAGCTGGGCACACTGTCCCTGAATACAAGCCAAGGGAAGCACTGGACTTTTTCGGCAGATGGTTGGAAGGAAAAGCAATATAA 1449 45.13 MLFSFVVFTEAAPKGSLITHLPGFNGIFPSKHYSGYVDIGGEPAKNLFYYFVVSERNPAKDPLVLWLNGGPGCSSFDGFVYEHGPFNFEAGKTPISLPTLHLNPYSWSKVSSMIYLDSPTGVGFSFSKNTWQYKTGDVQTASDTHEFLLRWFKEFPEFITNPFYVSGESYAGVYVPTLSAAIVKGIKSGAKPTINFKGYLVGNGVTDMEFDANALVPFTHGMGLISSEMFEKARDNCGGNYYSNESKSCIEELNKIYNAISGLNQYDILEPCYHRPTKKGEETGNTTLPLSFKQLGATNRPLPVRTRMFGRAWPFRAPVKDGILPLWTELIKQNPIPCTDDQVASAWLNDKGVRTAIHAQQKDVIGEWEICTGRLHYSSDSGSMLQYHKNLTAKGYRALIYSGDHDMCVPFTGSEAWTRSLGYKIMDEWRAWISNDQVAGYTQGYEHGLTFLTIKGAGHTVPEYKPREALDFFGRWLEGKAI* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17057536 17060722 - Vvi4g875 Vvi4g875 785654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g875 482 Gene3D - 335 481 - -
Vvi4g875 482 Pfam Serine carboxypeptidase 22 479 IPR001563 GO:0004185|GO:0006508
Vvi4g875 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 103 115 IPR001563 GO:0004185|GO:0006508
Vvi4g875 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 126 IPR001563 GO:0004185|GO:0006508
Vvi4g875 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 176 IPR001563 GO:0004185|GO:0006508
Vvi4g875 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Vvi4g875 482 ProSitePatterns Serine carboxypeptidases, histidine active site. 449 466 IPR033124 GO:0004185
Vvi4g875 482 PANTHER CARBOXYPEPTIDASE 6 481 - -
Vvi4g875 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 481 IPR001563 GO:0004185|GO:0006508
Vvi4g875 482 Gene3D alpha/beta hydrolase 11 295 IPR029058 -
Vvi4g875 482 ProSitePatterns Serine carboxypeptidases, serine active site. 165 172 IPR018202 GO:0004185
Vvi4g875 482 SUPERFAMILY alpha/beta-Hydrolases 18 480 IPR029058 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g875 K16296 - vvi:100242709 1016.53