Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g877 ATGGATCTGGGCAGATGGGTGTTGTGCTTTTGCTTATTGGCATTGTTCCTGCCCACAATTGTGTCCGGGAATGCGGTTTTCAGAGTGCAGCACAAGTTCAAGGGTCGTGGGAAGTCGTTGGATGCACTCAGGGCACATGACACTCGCCGTCACGGTAGAATTCTTTCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTGCAAGTTGATACAGGAAGTGACATATTATGGGTTAATTGTGCTGGATGTGACAGATGTCCCACAAAAAGCGACCTTGGTGTTGATCTAACTCTATATGATATGAAAGCCTCTACAACTTCAGATGCAGTTGGTTGTGATGATAATTTTTGTTCCTTATATGATGGTCCACTACCTGGTTGCAAACCGGGGTTGCAATGTCTATACAGTGTTCTTTATGGAGATGGGAGCTCAACCACAGGCTACTTTGTGCAAGATTTTGTACAATACAACAGAATTTCAGGAAACTTTCAAACCACACCAACTAATGGGACTGTAGTATTCGGATGTGGAAATAAACAATCTGGGGAGCTAGGCTCATCTTCTGAAGCACTTGATGGAATACTTGGTTTTGGACAAGCAAATTCGTCTATGCTTTCACAGCTAGCTTCATCTGGAAAGGTGAAAAAAGTATTTTCACACTGCTTGGATAATGTAGATGGAGGTGGAATTTTTGCTATTGGAGAAGTTGTGGAACCAAAAGTAAACATAACCCCGTTGGTACAAAATCAGGCACATTACAATGTTGTTATGAAGGAAATTGAGGTGGGTGGTGATCCTCTTGACGTTCCCTCAGATGCATTTGAATCTGGTGACCGGAAAGGCACAATAATTGACAGTGGCACAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAGATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAATGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGGAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCACAAACAAAGGATGGAAAGGACTTGACTCTTTTGGGAGATCTTGTACTATCAAATAAGCTTGTTGTATATGATCTTGAAAAGCAAGGAATTGGATGGGTTGAATATAACTGCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTGTAGGTGCCCATGATCTTTCTTCCAGTTACAGTCTGACTAGTGGAAGCATTTTGATATCATTGTTATTACCAATTGCTATGCTTCACAGTTTTATATATTGA 1443 41.93 MDLGRWVLCFCLLALFLPTIVSGNAVFRVQHKFKGRGKSLDALRAHDTRRHGRILSAVDLPLGGNGHPSEAGLYFAKIGIGTPSKDYYVQVDTGSDILWVNCAGCDRCPTKSDLGVDLTLYDMKASTTSDAVGCDDNFCSLYDGPLPGCKPGLQCLYSVLYGDGSSTTGYFVQDFVQYNRISGNFQTTPTNGTVVFGCGNKQSGELGSSSEALDGILGFGQANSSMLSQLASSGKVKKVFSHCLDNVDGGGIFAIGEVVEPKVNITPLVQNQAHYNVVMKEIEVGGDPLDVPSDAFESGDRKGTIIDSGTTLAYFPQEVYVPLIEKILSQQPDLRLHTVEQAFTCFDYTGNVDDGFPTVTLHFDKSISLTVYPHEYLFQVKEFEWCIGWQNSGAQTKDGKDLTLLGDLVLSNKLVVYDLEKQGIGWVEYNCSSSIKVKDERSGSVFRVGAHDLSSSYSLTSGSILISLLLPIAMLHSFIY* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17094879 17107573 - Vvi4g877 Vvi4g877 785656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g877 480 Pfam Xylanase inhibitor N-terminal 74 256 IPR032861 -
Vvi4g877 480 Gene3D Acid Proteases 258 437 IPR021109 -
Vvi4g877 480 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Vvi4g877 480 PRINTS Pepsin (A1) aspartic protease family signature 304 315 IPR001461 GO:0004190|GO:0006508
Vvi4g877 480 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
Vvi4g877 480 CDD pepsin_A_like_plant 74 431 IPR034161 -
Vvi4g877 480 Pfam Xylanase inhibitor C-terminal 274 426 IPR032799 -
Vvi4g877 480 ProSiteProfiles Peptidase family A1 domain profile. 74 427 IPR033121 -
Vvi4g877 480 PANTHER ASPARTYL PROTEASES 9 449 IPR001461 GO:0004190|GO:0006508
Vvi4g877 480 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 449 - -
Vvi4g877 480 SUPERFAMILY Acid proteases 70 435 IPR021109 -
Vvi4g877 480 Gene3D Acid Proteases 56 257 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g877 - - - vvi:100256470 946.421
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001410 2 2 2 4 2 2 4 2 2 2 2 2 3 2 2 4 2 1 4 2 2 2 3 2 2 2 2 8 2 1 74