Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g878 ATGGCTCTCCGCCTCTCCCTCTCTCCTCCTCCTATTCGCTCCTCCGCCTCCCCATCGTGGGCCGCGCCGCACTCGATCGCGATCTCCTGCTCCTCTTCGTCGTCGGTTGGGGTGTCTGTCCCGACGCAGGAGAAGAGGAGGGCTAGGGTTGTGGTGCGGTCGTCGAGCATCGACACTGCCGAGGCGGTCGTGGGACAGGTGACCGAGGTGAATAAGGACACATTCTGGCCTATAGTCAAGGCCGCCGGGGACAAGGCCGTCGTTCTCGATATGTACACTCAGTGGTGTGGTCCCTGCAAAGTGATGGCTCCAAAATTCCAAGAATTGTCTGGGAAGTATCTTGACGTTGTCTTTCTAAAGCTGGACTGCAACCAAGACAACAAGACTTTGGCAAAGGAGCTGGGAATCAGGGTGGTTCCTACCTTCAAGATCCTGAAGGACAGCAAGATCGTAAAGGAAGTTACAGGGGCCAAATTAGACGATTTGGTTGTCGCCATAGAGACTGTTAGATCAAGTTAG 519 54.91 MALRLSLSPPPIRSSASPSWAAPHSIAISCSSSSSVGVSVPTQEKRRARVVVRSSSIDTAEAVVGQVTEVNKDTFWPIVKAAGDKAVVLDMYTQWCGPCKVMAPKFQELSGKYLDVVFLKLDCNQDNKTLAKELGIRVVPTFKILKDSKIVKEVTGAKLDDLVVAIETVRSS* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17127762 17132342 + Vvi4g878 Vvi4g878 785657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g878 172 PANTHER THIOREDOXIN F2, CHLOROPLASTIC 1 172 - -
Vvi4g878 172 CDD TRX_family 73 157 - -
Vvi4g878 172 ProSitePatterns Thioredoxin family active site. 88 106 IPR017937 -
Vvi4g878 172 PRINTS Thioredoxin family signature 87 95 - -
Vvi4g878 172 PRINTS Thioredoxin family signature 95 104 - -
Vvi4g878 172 PRINTS Thioredoxin family signature 135 146 - -
Vvi4g878 172 Pfam Thioredoxin 67 166 IPR013766 -
Vvi4g878 172 PANTHER THIOREDOXIN 1 172 - -
Vvi4g878 172 SUPERFAMILY Thioredoxin-like 60 168 IPR036249 -
Vvi4g878 172 ProSiteProfiles Thioredoxin domain profile. 48 171 IPR013766 -
Vvi4g878 172 Gene3D Glutaredoxin 50 171 - -
Vvi4g878 172 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g878 K03671 trxA; thioredoxin 1 - vvi:100261565 273.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0945 Cone1ag1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34