Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g88 ATGGGCTCATCATCATCATCATCTTCTTCACCAGGCTTTGCTCCTCACCCATTGGAGGCTCGCAACAGCTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATGTCTCACAGAATACACAGCAAGGAGGACTAGGAGCTTGTGTGGAATTAGGGCAATACGGATTGGAGGATGAACTTGAAAGATTGAAGAGAGACAGAAACGTATTAATGGCAGAGATCGGGAAGCTGCGGCAGCAACAACAGAATTCCAGGAATGAACTAGTTGCCATGGAGGGTCGAATGCAGAACACAGAGAAGAAGCAGATGCAGATGATGACCTTTCTCGCCAAAGCATTAAACAACCCTTCCTTTGTCCAGCAATTTATCCAGCAGAGAAGGGAACTTCGAGGGGCTGAAATCGGGCGAAAACGACGATTAACCACCAGTCAAAGTGCTGAGAATTTGCAGGAAGTGATAACGGACCCGAAAGCGGATTCCATTGATAACAACTTGGGTTCTGTCAATGATGTAATCTGGGAGGAACTATTGAGTGATGATCTGATTGCTGGCAATGAGGAAGAAGTACCCCCACTCCGACTGGGTGATCATCATGAACCAGAAACTGATGTGGAGGTGGAGGATTTGGTTGCAACGCCTTCAGACTGGGGTGAGGACTTCCAAGACCTTGTGGACCAAATGGCTTTTCTCAGGCCAAACCTCAGATCCAGACTCGAAAGAAGGGTTCTCAATCTTTGA 900 46.67 MGSSSSSSSSPGFAPHPLEARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKNIKRRRHVSQNTQQGGLGACVELGQYGLEDELERLKRDRNVLMAEIGKLRQQQQNSRNELVAMEGRMQNTEKKQMQMMTFLAKALNNPSFVQQFIQQRRELRGAEIGRKRRLTTSQSAENLQEVITDPKADSIDNNLGSVNDVIWEELLSDDLIAGNEEEVPPLRLGDHHEPETDVEVEDLVATPSDWGEDFQDLVDQMAFLRPNLRSRLERRVLNL* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 921551 923881 - Vvi4g88 Vvi4g88 784867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g88 299 PRINTS Heat shock factor (HSF) domain signature 36 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g88 299 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g88 299 ProSitePatterns HSF-type DNA-binding domain signature. 37 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g88 299 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-2 20 283 - -
Vvi4g88 299 Coils Coil 114 155 - -
Vvi4g88 299 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 283 IPR027725 -
Vvi4g88 299 Pfam HSF-type DNA-binding 20 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g88 299 Gene3D - 18 88 IPR036388 -
Vvi4g88 299 SUPERFAMILY Winged helix DNA-binding domain 21 87 IPR036390 -
Vvi4g88 299 SMART hsfneu3 9 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g88 K09419 HSFF; heat shock transcription factor, other eukaryote - vvi:100245740 531.561
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g88 . . . . . . . . Cmo05g00096 . . Cma05g00089 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0274 . . . . . . . Bda13g01599 . . . . . . . . . . Car05g00076 Cpe11g00071 . . . . . . . . . . . . . . . Lsi08g01589 Csa02g01831 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g517 . 7 238 HSF AT4G17750 50.2 4.0e-57 219.5
Vvi11g164 . 414 613 HSF AT4G17750 51.8 3.5e-53 206.5
Vvi4g88 . 22 194 HSF AT4G17750 57.6 3.3e-51 199.9
Vvi12g111 ECH 1 187 HSF AT4G17750 51.0 2.4e-46 183.7
Vvi10g260 ECH 7 146 HSF AT4G17750 57.6 6.7e-44 175.6
Vvi5g557 . 9 105 HSF AT4G17750 79.4 2.1e-42 170.6
Vvi16g112 . 1 86 HSF AT4G17750 87.2 2.0e-40 164.1
Vvi18g752 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.3
Vvi2g380 . 20 115 HSF AT4G17750 70.8 1.0e-36 151.8
Vvi4g88 . 22 198 HSF AT5G16820 56.6 3.5e-50 196.4
Vvi11g164 . 415 613 HSF AT5G16820 51.7 6.7e-49 192.2
Vvi12g111 ECH 1 187 HSF AT5G16820 53.5 1.9e-48 190.7
Vvi10g260 ECH 9 146 HSF AT5G16820 55.0 6.3e-39 159.1
Vvi16g112 . 1 87 HSF AT5G16820 85.1 2.4e-38 157.1
Vvi5g557 . 10 102 HSF AT5G16820 77.4 9.0e-38 155.2
Vvi4g88 . 22 182 HSF AT1G32330 54.7 1.8e-46 184.1
Vvi10g260 ECH 7 146 HSF AT1G32330 59.6 3.4e-45 179.9
Vvi16g112 . 1 87 HSF AT1G32330 83.9 4.3e-40 162.9
Vvi5g557 . 4 102 HSF AT1G32330 75.8 5.7e-40 162.5
Vvi18g752 . 20 154 HSF AT1G32330 53.6 4.1e-38 156.4
Vvi8g1038 . 97 275 HSF AT3G02990 55.1 1.4e-51 201.1
Vvi12g111 ECH 1 200 HSF AT3G02990 50.7 7.7e-50 195.3
Vvi4g88 . 22 194 HSF AT3G02990 54.7 1.6e-47 187.6
Vvi5g557 . 10 120 HSF AT3G02990 70.3 1.1e-40 164.9
Vvi16g112 . 1 84 HSF AT3G02990 88.1 1.2e-39 161.4
Vvi10g260 ECH 9 146 HSF AT3G02990 53.2 1.0e-38 158.3
Vvi18g752 . 8 154 HSF AT3G02990 50.9 2.2e-36 150.6
Vvi4g88 . 21 284 HSF AT2G26150 53.3 2.0e-71 266.5
Vvi11g164 . 404 630 HSF AT2G26150 54.7 9.6e-66 247.7
Vvi10g260 ECH 7 146 HSF AT2G26150 57.9 6.7e-43 171.8
Vvi5g557 . 1 102 HSF AT2G26150 73.5 1.9e-42 170.2
Vvi10g260 ECH 7 109 HSF AT5G03720 62.1 2.5e-36 150.2
Vvi18g752 . 24 145 HSF AT4G18880 56.6 2.9e-37 153.3
Vvi10g260 ECH 11 110 HSF AT4G13980 76.0 1.7e-41 167.5
Vvi11g164 . 404 611 HSF AT3G22830 50.7 1.9e-57 220.3
Vvi4g88 . 19 205 HSF AT3G22830 53.3 1.8e-50 197.2
Vvi5g557 . 1 102 HSF AT3G22830 76.5 1.8e-42 170.6
Vvi10g260 ECH 9 147 HSF AT3G22830 52.4 2.2e-37 153.7
Vvi5g557 . 1 109 HSF AT3G51910 66.1 3.5e-39 159.1
Vvi11g164 . 405 601 HSF AT3G63350 50.3 4.6e-50 195.3
Vvi1g517 . 1 241 HSF AT1G67970 55.4 1.7e-68 256.9
Vvi11g164 . 409 613 HSF AT5G54070 52.1 6.4e-51 198.4
Vvi7g1074 . 2 287 HSF AT4G36990 52.6 1.5e-69 260.0
Vvi16g620 . 13 171 HSF AT4G36990 54.8 3.2e-43 172.6
Vvi7g1074 . 3 197 HSF AT5G62020 54.3 1.7e-42 170.2
Vvi18g752 . 17 117 HSF AT5G62020 66.3 6.6e-39 158.3
Vvi2g380 . 16 287 HSF AT4G11660 51.4 5.7e-72 268.5
Vvi18g752 . 16 119 HSF AT4G11660 76.0 9.2e-46 181.4
Vvi6g975 . 16 115 HSF AT4G11660 70.0 6.9e-41 165.2
Vvi7g1074 . 2 98 HSF AT4G11660 70.1 2.0e-40 163.7
Vvi8g1462 . 15 112 HSF AT4G11660 71.4 3.2e-38 156.4
Vvi8g1462 . 19 113 HSF AT2G41690 81.1 3.4e-41 165.6
Vvi18g752 . 1 279 HSF AT1G46264 54.3 3.5e-84 308.9
Vvi6g975 . 9 272 HSF AT1G46264 50.8 3.8e-70 262.3
Vvi8g1462 . 16 113 HSF AT1G46264 70.4 3.5e-39 159.5
Vvi11g344 . 8 177 HSF AT3G24520 72.9 3.0e-64 242.7
Vvi1g517 . 7 238 HSF AT4G17750 50.2 4.0e-57 219.5
Vvi11g164 . 414 613 HSF AT4G17750 51.8 3.5e-53 206.5
Vvi4g88 . 22 194 HSF AT4G17750 57.6 3.3e-51 199.9
Vvi12g111 ECH 1 187 HSF AT4G17750 51.0 2.4e-46 183.7
Vvi10g260 ECH 7 146 HSF AT4G17750 57.6 6.7e-44 175.6
Vvi5g557 . 9 105 HSF AT4G17750 79.4 2.1e-42 170.6
Vvi16g112 . 1 86 HSF AT4G17750 87.2 2.0e-40 164.1
Vvi18g752 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.3
Vvi2g380 . 20 115 HSF AT4G17750 70.8 1.0e-36 151.8
Vvi4g88 . 22 198 HSF AT5G16820 56.6 3.5e-50 196.4
Vvi11g164 . 415 613 HSF AT5G16820 51.7 6.7e-49 192.2
Vvi12g111 ECH 1 187 HSF AT5G16820 53.5 1.9e-48 190.7
Vvi10g260 ECH 9 146 HSF AT5G16820 55.0 6.3e-39 159.1
Vvi16g112 . 1 87 HSF AT5G16820 85.1 2.4e-38 157.1
Vvi5g557 . 10 102 HSF AT5G16820 77.4 9.0e-38 155.2
Vvi4g88 . 22 182 HSF AT1G32330 54.7 1.8e-46 184.1
Vvi10g260 ECH 7 146 HSF AT1G32330 59.6 3.4e-45 179.9
Vvi16g112 . 1 87 HSF AT1G32330 83.9 4.3e-40 162.9
Vvi5g557 . 4 102 HSF AT1G32330 75.8 5.7e-40 162.5
Vvi18g752 . 20 154 HSF AT1G32330 53.6 4.1e-38 156.4
Vvi8g1038 . 97 275 HSF AT3G02990 55.1 1.4e-51 201.1
Vvi12g111 ECH 1 200 HSF AT3G02990 50.7 7.7e-50 195.3
Vvi4g88 . 22 194 HSF AT3G02990 54.7 1.6e-47 187.6
Vvi5g557 . 10 120 HSF AT3G02990 70.3 1.1e-40 164.9
Vvi16g112 . 1 84 HSF AT3G02990 88.1 1.2e-39 161.4
Vvi10g260 ECH 9 146 HSF AT3G02990 53.2 1.0e-38 158.3
Vvi18g752 . 8 154 HSF AT3G02990 50.9 2.2e-36 150.6
Vvi4g88 . 21 284 HSF AT2G26150 53.3 2.0e-71 266.5
Vvi11g164 . 404 630 HSF AT2G26150 54.7 9.6e-66 247.7
Vvi10g260 ECH 7 146 HSF AT2G26150 57.9 6.7e-43 171.8
Vvi5g557 . 1 102 HSF AT2G26150 73.5 1.9e-42 170.2
Vvi10g260 ECH 7 109 HSF AT5G03720 62.1 2.5e-36 150.2
Vvi18g752 . 24 145 HSF AT4G18880 56.6 2.9e-37 153.3
Vvi10g260 ECH 11 110 HSF AT4G13980 76.0 1.7e-41 167.5
Vvi11g164 . 404 611 HSF AT3G22830 50.7 1.9e-57 220.3
Vvi4g88 . 19 205 HSF AT3G22830 53.3 1.8e-50 197.2
Vvi5g557 . 1 102 HSF AT3G22830 76.5 1.8e-42 170.6
Vvi10g260 ECH 9 147 HSF AT3G22830 52.4 2.2e-37 153.7
Vvi5g557 . 1 109 HSF AT3G51910 66.1 3.5e-39 159.1
Vvi11g164 . 405 601 HSF AT3G63350 50.3 4.6e-50 195.3
Vvi1g517 . 1 241 HSF AT1G67970 55.4 1.7e-68 256.9
Vvi11g164 . 409 613 HSF AT5G54070 52.1 6.4e-51 198.4
Vvi7g1074 . 2 287 HSF AT4G36990 52.6 1.5e-69 260.0
Vvi16g620 . 13 171 HSF AT4G36990 54.8 3.2e-43 172.6
Vvi7g1074 . 3 197 HSF AT5G62020 54.3 1.7e-42 170.2
Vvi18g752 . 17 117 HSF AT5G62020 66.3 6.6e-39 158.3
Vvi2g380 . 16 287 HSF AT4G11660 51.4 5.7e-72 268.5
Vvi18g752 . 16 119 HSF AT4G11660 76.0 9.2e-46 181.4
Vvi6g975 . 16 115 HSF AT4G11660 70.0 6.9e-41 165.2
Vvi7g1074 . 2 98 HSF AT4G11660 70.1 2.0e-40 163.7
Vvi8g1462 . 15 112 HSF AT4G11660 71.4 3.2e-38 156.4
Vvi8g1462 . 19 113 HSF AT2G41690 81.1 3.4e-41 165.6
Vvi18g752 . 1 279 HSF AT1G46264 54.3 3.5e-84 308.9
Vvi6g975 . 9 272 HSF AT1G46264 50.8 3.8e-70 262.3
Vvi8g1462 . 16 113 HSF AT1G46264 70.4 3.5e-39 159.5
Vvi11g344 . 8 177 HSF AT3G24520 72.9 3.0e-64 242.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006629 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14790 PF00447 HSF_DNA-bind 2.70E-23 CL0123 Vvi TF