Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g884 ATGATTTTGGTTGAAACATTTTTATCGACTTACATTCTCCACCAAATGGGGTTCCTTAGCAATAGTAGTGGGTTTAGTGATATGCTCAAGAAGCTTTTGCTACTGCCACTGCTCCTTTCCTTTCTCCTCACTTTCTCACTATCTGAGGTCATTTTTGAAGAGAGATTCGAAGATGGGTGGCAGAGTCGGTGGGTTAAATCAGATTGGAAGAAAAGTGAAGGGAAGGCAGGATCATTTAAGCACACGGCTGGCAAGTGGGCTGGAGATCCAGATGATAAAGGTATCCAGACATCTACAGATGCAAGGCACTTCGCCATATCTGCTAAGATTCCAGAGTTCAGCAACAAGAACAGAACATTGGTACTCCAGTATTCTATAAGGTTTGAACAGGAAATTGAATGTGGTGGTGGTTACATAAAACTTCTTTCTGGATTTGTCAATCAGAAGAAATTTGGGGGTGACACTCCTTACAGTGTAATGTTTGGACCAGATCTATGTGGTACACAAACAAAGAAGCTCCATGTTATAGTCTCCTACCAGGGCCAGAATTACCCTATCAAGAAGGATCTGCAATGTGAAACGGATAAGTTAACACATTTCTACACATTCATTCTTAGGCCTGATGCATCGTATAGCGTCCTGATTGACAATCGAGAGAGAGAATCCGGAAGCATGTATTCTGATTGGGATATCCTCCCCCCTCGAAAGATTAAAGACACCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGAGAATATATTGAAGATCCTAATGATGTCAAACCTGAGGGTTACGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCTAAAGAGCCTGATAATTGGGATGAAGAAGAGGATGGTTTATGGAAACCACCAAAAATACCAAATCCAGCATTCAAAGGACCATGGAGGCGGAAGAAAATTAAGAATCCTAACTACAAGGGGAAGTGGAAGAATCAATGGATCGACAATCCCGAATTTGAAGATGACCCTGATCTTTATGTACTAAAGCCAATTAAATATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTGCAATTTATGACAACATTTTGATTTGTGATGATCCAGAGTATGCAAAACAAGTTGTGGAGGAAGTATTTGCCCATAGGGAGTCTGAAAAAGAGGCATTTGAGGAAGCAGAAAAAGTGAGAAAAGCACGAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAGGAAGGTGAAAGAAGGAGAAGGGAGCGGGGCCATGATCGACGTTATCGAGATAGGGAGCGATACAGAGACAGATATAGAAGGCATCATCGCCGCGATTACTTGGATGATTACCATGATGAACTCTGA 1347 42.32 MILVETFLSTYILHQMGFLSNSSGFSDMLKKLLLLPLLLSFLLTFSLSEVIFEERFEDGWQSRWVKSDWKKSEGKAGSFKHTAGKWAGDPDDKGIQTSTDARHFAISAKIPEFSNKNRTLVLQYSIRFEQEIECGGGYIKLLSGFVNQKKFGGDTPYSVMFGPDLCGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSVLIDNRERESGSMYSDWDILPPRKIKDTKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKEPDNWDEEEDGLWKPPKIPNPAFKGPWRRKKIKNPNYKGKWKNQWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGAIYDNILICDDPEYAKQVVEEVFAHRESEKEAFEEAEKVRKAREEEEAQRAREEGERRRRERGHDRRYRDRERYRDRYRRHHRRDYLDDYHDEL* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17237680 17249747 - Vvi4g884 Vvi4g884 785663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g884 448 MobiDBLite consensus disorder prediction 272 292 - -
Vvi4g884 448 MobiDBLite consensus disorder prediction 242 295 - -
Vvi4g884 448 PIRSF Calreticulin 28 439 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 Pfam Calreticulin family 53 288 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 Pfam Calreticulin family 289 362 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 Gene3D - 49 406 - -
Vvi4g884 448 SUPERFAMILY Concanavalin A-like lectins/glucanases 45 247 IPR013320 -
Vvi4g884 448 SUPERFAMILY P-domain of calnexin/calreticulin 230 345 IPR009033 GO:0005509|GO:0005515
Vvi4g884 448 PANTHER CALRETICULIN-3 30 428 - -
Vvi4g884 448 Coils Coil 379 415 - -
Vvi4g884 448 PANTHER CALRETICULIN AND CALNEXIN 30 428 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 Gene3D Calreticulin/calnexin, P domain 234 335 IPR009033 GO:0005509|GO:0005515
Vvi4g884 448 MobiDBLite consensus disorder prediction 242 262 - -
Vvi4g884 448 PRINTS Calreticulin signature 129 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 PRINTS Calreticulin signature 155 171 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 PRINTS Calreticulin signature 244 257 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 PRINTS Calreticulin signature 272 294 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 PRINTS Calreticulin signature 310 329 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 PRINTS Calreticulin signature 343 363 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g884 448 MobiDBLite consensus disorder prediction 389 421 - -
Vvi4g884 448 ProSitePatterns Calreticulin family signature 1. 127 142 IPR018124 GO:0005509
Vvi4g884 448 ProSitePatterns Calreticulin family signature 2. 159 167 IPR018124 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g884 K08057 CALR; calreticulin - vvi:100265011 743.421
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0587 Cone3ag0614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g00219 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35