Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g886 ATGTTGATCCACCGCCATCGCCAAATCCTTACAAACGCCCTTCACCTCCGCCACTTCTCCCAATCTGCTGCCGCCGCGGTTCTCCAGGACCCCCTTGAACCACCACCGCTTACGTACCTGGAAGGCTTCCCTAGACCCGATCCCAAATTCGCAGAAATCATACGCGCCATCCCTCGCACCATCTCCGGCAAGAACATCTCTGCCAAGGAGCGGAAAGTCGGCCGCGTCCCCAGCATTGTGTTCGAGCAAGAAGACGGTCAACACGGCGGCAACAAGCGACTCATTTCTGTGCGGACCAACCAGATTCGGAAGCTCGTCAACCACCTGGGCCGGTCTTTCTTTTTGTCGCGTTTGTTTGATCTCGAAGTCGGACCCGATTTTGAGTCCAATGAGGTCATCGAGAAAGTTCGGGTTTTGCCTCGAAAGCTTCATCTGCATGCAGGCACGGATGCAGTGCTTAATGTGACCTTTATAAGGGCCCCTTCTCACGCATTATTGAAGGTTGATGTTCCTCTTGTTTTTAGGGGAGAAGATGTGTCTCCTGGATTGAAAAAAGGGGCATATTTGAATACCATAAAAAGGACTGTTAAGTACCTTTGTCCAGCAGATATCATCCCTCCATATATTGATGTAGATCTAAGCGAGTTGGATGCGGGGCAGAAGATAGTCATGGGGGACCTCAAAGTTCATCCAGCTTTGAAGCTTCTTCGGTCAAAAGATGAACCAGTTTGTAAGATTATGGGAACAAGGGTTTCTGACCAAAGGAAATCTAAATAA 777 49.55 MLIHRHRQILTNALHLRHFSQSAAAAVLQDPLEPPPLTYLEGFPRPDPKFAEIIRAIPRTISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVGPDFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGEDVSPGLKKGAYLNTIKRTVKYLCPADIIPPYIDVDLSELDAGQKIVMGDLKVHPALKLLRSKDEPVCKIMGTRVSDQRKSK* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17261345 17265845 + Vvi4g886 Vvi4g886 785665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g886 258 Pfam Ribosomal protein TL5, C-terminal domain 166 249 IPR020057 -
Vvi4g886 258 Gene3D Ribosomal protein L25, beta domain 164 254 IPR037121 -
Vvi4g886 258 Gene3D Ribosomal Protein L25; Chain P 53 160 IPR020056 -
Vvi4g886 258 SUPERFAMILY Ribosomal protein L25-like 58 248 IPR011035 GO:0006412
Vvi4g886 258 CDD Ribosomal_L25_TL5_CTC 53 159 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g886 258 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 16 257 - -
Vvi4g886 258 Pfam Ribosomal L25p family 55 157 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g886 258 PANTHER BNAA01G13300D PROTEIN 16 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g886 K02897 RP-L25, rplY; large subunit ribosomal protein L25 - vvi:100242725 513.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0761 . . . . . . . . . . . . . . Sed02g0840 . . . . . . . . Bhi10g02238 Tan07g1016 Cmetu11g1488 . Hepe10g0820 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010163 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 2 31