Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g887 ATGCTCATCATTTCCATATTATTTCTTGCTTTCACCGCCACCCTCCTCTTCAGATTCGCCACTGCAGATGGCGATTTCACACTGCTCTCCAAGAGGCACCCCAAGCGCCAAGAAATCGAGGACAAGGTCGTTTGGATCACTGGTGCCAGCCGCGGAATCGGGGAGGTTCTTGCCAAGCAACTTGCGGGTTTGGGGGCGAAATTGATTCTTTCAGCGCGAAATGAGGTCGAATTGGAGCGAGTTAAGCAGCAGCTCAGAGGGAAGCATGCACCTGGGGAGGTGGAGATTTTGCCTCTGGATTTGGCAGGTGGTGAGGATTCTCTCAGGGAGGCTGTGGAGAAAGCGGAATCATTCTTTTCAGGGGCTGGTGTTGATTATATGATTCATAATGCGGCTTACGAGCGCCCTAAAGCATCAGCTGTGGATGTAACTGAGGAAAGCCTTAAGGCTACTCTCAATGTGAATGTTATTGGAACGATCTCTCTTACACAGTTGCTCGCACCTTTCATGCTGAAGCGAGGGAGGGGTCATTTTGTTGTGATGAGCAGTGCTGCAGGAAAGACACCTGCACCGGGACAGGCTGTGTACTCTGCTTCTAAATATGCTCTAAATGGATACTTCCACACCTTGCGTTCTGAGCTCTGTCAAAAAGGAATTAAGGTGACTGTTGTCTGTCCTGGACCAATAGAGACATCAAATGGTTCTAAAGCAAGCACTGAGAGGCGTGTGTCATCAGAGAGGTGTGCAGAGCTGACTATTATTGCTGCAACCCATGGTCTAAAAGAAGTTTGGATATCGTGTCAGCCTGTACTAGCGGTTATGTACTTGGTGCAGTACATGCCAACCATTGGCTTCTGGCTCATGGACAAGGTTGGTGCGAATCGAGTTGAAGCAGCTAAACAAAAGGGCAGCACTTACTCACTGGGATTACTCTTTGGGAAAAAGAAGGCAGCATGA 957 48.9 MLIISILFLAFTATLLFRFATADGDFTLLSKRHPKRQEIEDKVVWITGASRGIGEVLAKQLAGLGAKLILSARNEVELERVKQQLRGKHAPGEVEILPLDLAGGEDSLREAVEKAESFFSGAGVDYMIHNAAYERPKASAVDVTEESLKATLNVNVIGTISLTQLLAPFMLKRGRGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHTLRSELCQKGIKVTVVCPGPIETSNGSKASTERRVSSERCAELTIIAATHGLKEVWISCQPVLAVMYLVQYMPTIGFWLMDKVGANRVEAAKQKGSTYSLGLLFGKKKAA* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17272093 17283855 + Vvi4g887 Vvi4g887 785666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g887 318 PRINTS Glucose/ribitol dehydrogenase family signature 43 60 IPR002347 -
Vvi4g887 318 PRINTS Glucose/ribitol dehydrogenase family signature 122 133 IPR002347 -
Vvi4g887 318 PRINTS Glucose/ribitol dehydrogenase family signature 170 186 IPR002347 -
Vvi4g887 318 PRINTS Glucose/ribitol dehydrogenase family signature 196 215 IPR002347 -
Vvi4g887 318 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vvi4g887 318 Gene3D - 24 295 - -
Vvi4g887 318 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 42 231 - -
Vvi4g887 318 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 1 316 - -
Vvi4g887 318 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 289 IPR036291 -
Vvi4g887 318 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 183 211 IPR020904 GO:0016491
Vvi4g887 318 Pfam short chain dehydrogenase 42 239 IPR002347 -
Vvi4g887 318 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 1 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g887 K11165 DHRS7; dehydrogenase/reductase SDR family member 7 [EC:1.1.-.-] - vvi:100247868 601.668
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g887 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010778 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 2 1 1 31