Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g891 ATGCTCCTGCGCTACTATGCCCATCTCCTCCGGAAACCATCGCCTTTCATTGCCGTTTTCTTAGTCCCTAAAGTTGTTTTAGTTCCTCAGCAAGCAGAAGCTGTGAAAATGCACACTGACCTCAAAGTGGGCACGTATTGGGGAGATATGGGAGTTGATTTCTGGGATGCTGCAACTTGGAGGAAAGAACAAGACAAGCATGAGGTGCTTGTAATGACACCCGCAATTTTACTCAATGGCTTGAGGCATAGCTTTTTCAAATTGGACATGATTAAGGTTTTGATATTTGATGAATGCCATCATGCCAGGGGCAAAGACCCTTATGCTTGCATTATGAAAGAGTTCTATCATGAACAAGTACGGTCTAATAACTCTAATCTTCCTCGGATATTTGGAATGACTGCTTCCCCTATAAAGACCAAAGGGACAACATCAACATGGTCCTGTGGTAAAAATATGATTGAACTGGAGAATCTTATGAACTCAAAGATATACACAAGTGTTAGTGAAGCTGTATTGGCTGAGTTTGTACCATTCTCAACTCCAAAGTTGACGCATTATAAAGACAAGGATATCCCATCTGCCTTATTTGAGAATGTAGCACATCAATTAGAGATTTTGAAGAATAAGTATGAACACTCTCTAGAAAGCTTGAATCTCATGGAATCTACAAAGGAATCTGCTAGGAAAAAAATATCCAAGCTATTTTCTGCATTTTTGTTTTGTTTGAATGACCTTGGGCTCTGGTTGGCTTTAAAGGCTGCTGAGTTCTCGTTTTGTGATGATATGGACATCTGTTGCTGGGGACAGTTGGATTTGTCTGGTGAGGAAATAATTAAAAATTTCAATAAGGATGCATACAAAGTGATCTCGACATATTTACCATCTGATCGAGAGCTTTCTGTTGGTGATGATCTGGAAGCTGATGCAGAGTCCGGGTTCCTAACGACAAAAGTTATTTGCCTCGTTGGGTCTCTTCTTCAATACAGGCATTTAAAGAATTTGAGATGCATAGTTTTTGTTGAAAGGGTCATTACAGCTATTGTTCTTCAAAAACTGCTAAGTAAGTTGCTTCCCAAATTAAGTGGTTGGGAAGCAGGATATATAGCAGGGAATGCTTCTCAATTGCAATCTCAAAGTAGGAGAGTGCAAAATGCACTTGTTGAAGAATTTCGCAAAGGCATGGTGAATGTTATTGTTTCAACATCGATCCTTGAGGAGGGTTTAGATGTTCAGAGTTGCAACTTGGTCATAAGATTTGATCCCTCAGCCACAGTTTGCAGTTTTATACAGTCCCGAGGTCGTGCTAGAATGCAGAATTCTGATTACTTATTAATGGTGAAAAGTGGGGATGATAAAACACTTTCAAGGCTACGGACCTATCTTGATAGTGGAAAAGTAATGAGGGAAGAGTCCTTACGCAATGCCTCCCTCCCTTGTGCACCTCTCAAAAGTAGTTTGGATGATGAAGAGTTCTATTGGGTTGAAAGTACTAGAGCAATAGTGACTCTGAGTTCCAGCATTGGGTTGTTATACTTCTACTGTTCCCGGCTCCCTTCTGATGGATATTTTAAACCGACTCCTAGGTGCTCTATCAATCAGGACATGGGGACTTGCACCATATACCATCCTAAAAGCTGCCCAATACAAACTGTTTCTGTGCGAGGCAACATTAAAACACTGAAGCAGATTGCATGCCTTGAAGCATGCAAGGAACTACATAAAGCCGGAGCTTTAACTGATAATCTTGTGCCACAGATTGTTGAGGAAGAAGCTATTGTTGCACAAGATGAAAATATGCCTTACGATGATGAGCAGGCGACTTATTATCCACCAGAGTTGATTAATCCTTCATTAAAGGATCCAGTCACCCCATATCATTGCTACTTAATTGAGTTGGACCAAAAGTACGAATATGAAGTTTCTCCTCAGGGTATTGTGCTTGCTGTTAGGAGTGAACTTGAATATGATGTTGGAAATGTAAATTTTGACTTGCAAGTTGATAGGGGTACTATGACTGTGAGCATGAATTATGTTGGAGTGATCCATCTTACTGCTGAGCAGGTTCTTATGTGTAGGAAGTTTCAAATCACTCTTTTAAGGGTTCTTATAGATCGTGCTATAGATAAAGGGGTTTTTGACAGATATGACTTAGGAAATGATCAAATGGTGGACTATCTCATGCTCCCGTCGACTAACTCACGGGAAATACCATCCATCGTTGATTGGAAATGTCTTGGTTCTGTTTTCTTTTCACATGAAAATGCTTCCAATCACATGGGTTGCTTCTTTCCAAGGATGCATACAAAAAGTGGTTTTGTTTGTAGTTGTACACTTAAAAATTCAATAGTGTACACTCCGCACACTAGCCAATTTTATTGCATCACTGGTATTTTGGGTGAATTGAACGGGAACTCGTTTCTTAGTTTGAAGAATGGAGGTCTTCTTACTTACAAGGAATATTATCGTCTAAGGCATGGAATTGAGTTGCAGTTTGATGGAGAAAAATTGCTTAAAGGAAGACGCATGTTTGTGGTACAAAACTATCTTCAGAGGTGCAGACAACAGAAGGAGAAAGAGTTGAGTAACACAACCGTCGAACTGCCTCCTGAGCTATGTGTTATCTTTATGTCTCCAATATCTATTAGTATTATCTATTCTTTCTCATTGATCCCATCCATCATGCATCGGATTGAGTCTCTACTACTTGCTGTCAATTTGAAAAATATACACCTCAACTATTGCAAGCAAAATGACATTCCAACTTTCAAGGTATTGGAAGCAATTACGACAAAGCATTGCCAAGAGGGATTTCATTTGGAGTCTTTGGAGACCCTTGGAGACTCTTTTCTCAAATATGCTGCAAGTCAACAGCTCTTCAAAACCTTTCAAAATCATCATGAGGGCCTTCTTAGTGTTAAGAAAGAAAGAATAATTTCTAATGCTTCATTGTGCAAGCTAGGATGTGACCGCAAACTTCCGGGTTTTATCCGTAATGAGTCTTTTGACCCTAAAAAGTGGATCATTGCGGGTGATCAATCTAGAAGCCATGTCTTTGGTGAAGAGTTACTTTCAAGTACCAGAAAGATCTATGTCAGTGAAAGAAGAAAGCTGAAAAGTAAGAGAATTGCTGATGTTGTTGAGGCACTAATCGGCGCATTCCTTAGCACAGGTGGTGAAACAGCAGCATTGATATTTATGAGATGGCTTGGTATAAATGTTGATTTTGTCAAAGTACCATACAAAAGAGACTTCCCAGTGATCCTGAAGAGGCATGTCAATGTCAGCTACTTAGAGTCAATATTGAATTACTCATTCCGTGATCCTTCTCTGCTAGTTGAAGCACTGACGCATGGTTCTTACATGCTTCCTGAGATTCCTAGATGCTATCAGCGGCTTGAATTCCTTGGGGATGCAGTATTGGATTATCTGATGACCATGCACCTGTACCATAAGTACCCCGGGATGTCACCAGGACTGTTGACTGACCTCAGGTCTGCCTCTGTCAACAATGATTGTTATGCACAATCTGCAGTGAAGGCTAAATTGCACCAACACATTCTCCATTCTTCACAAGAGCTTCACAGGCACATAGTTGTCACGGTTGGCAATTTTGACAAATTACCTGTGGAATCAACTTTCGGATGGGAATCTGAGTCATCTTTCCCCAAGGTACTGGGAGATGTCATAGAATCTCTGGCGGGAGCAATTCTTGTTGATTCAGATTACAATAAGGAGGTTGTCTTTCAGAGCATAAGGCCTCTTTTGGAGCCTCTCATTACGCCTGAAACAGTGAAGCTCCACCCTGCAAGAGAGCTGGGTGAACTCTGTCAGAAAGAACATTATGATATAAAAAGAGTTGTTGTATCTCAGAATGGCAAGGCTTCAGTTACAATTGAGGTTGAAGCAAATGGGGCGAAACACAAACATACAAGTACGTCAGATAAGAGAACTGCAACAAAATTGGCTTCGAAAGAAGTTTTGAAGTCTTTGAAGGAAAGCATAGCCCAGACAGGTAACTGA 4023 40.47 MLLRYYAHLLRKPSPFIAVFLVPKVVLVPQQAEAVKMHTDLKVGTYWGDMGVDFWDAATWRKEQDKHEVLVMTPAILLNGLRHSFFKLDMIKVLIFDECHHARGKDPYACIMKEFYHEQVRSNNSNLPRIFGMTASPIKTKGTTSTWSCGKNMIELENLMNSKIYTSVSEAVLAEFVPFSTPKLTHYKDKDIPSALFENVAHQLEILKNKYEHSLESLNLMESTKESARKKISKLFSAFLFCLNDLGLWLALKAAEFSFCDDMDICCWGQLDLSGEEIIKNFNKDAYKVISTYLPSDRELSVGDDLEADAESGFLTTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLPKLSGWEAGYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRARMQNSDYLLMVKSGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTPRCSINQDMGTCTIYHPKSCPIQTVSVRGNIKTLKQIACLEACKELHKAGALTDNLVPQIVEEEAIVAQDENMPYDDEQATYYPPELINPSLKDPVTPYHCYLIELDQKYEYEVSPQGIVLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLRVLIDRAIDKGVFDRYDLGNDQMVDYLMLPSTNSREIPSIVDWKCLGSVFFSHENASNHMGCFFPRMHTKSGFVCSCTLKNSIVYTPHTSQFYCITGILGELNGNSFLSLKNGGLLTYKEYYRLRHGIELQFDGEKLLKGRRMFVVQNYLQRCRQQKEKELSNTTVELPPELCVIFMSPISISIIYSFSLIPSIMHRIESLLLAVNLKNIHLNYCKQNDIPTFKVLEAITTKHCQEGFHLESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGINVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYDIKRVVVSQNGKASVTIEVEANGAKHKHTSTSDKRTATKLASKEVLKSLKESIAQTGN* 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17331794 17344656 - Vvi4g891 Vvi4g891 785670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g891 1340 Gene3D Dicer dimerisation domain 502 594 IPR038248 -
Vvi4g891 1340 SMART riboneu5 1110 1265 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 SMART riboneu5 923 1079 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 ProSiteProfiles Ribonuclease III family domain profile. 1095 1242 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 CDD RIBOc 926 1077 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 PANTHER - 587 1332 - -
Vvi4g891 1340 SUPERFAMILY RNase III domain-like 1093 1263 IPR036389 GO:0004525|GO:0006396
Vvi4g891 1340 Gene3D - 1 225 IPR027417 -
Vvi4g891 1340 SUPERFAMILY PAZ domain 774 875 IPR036085 GO:0005515
Vvi4g891 1340 Gene3D paz domain 765 879 - -
Vvi4g891 1340 CDD DEXHc_dicer 1 166 - -
Vvi4g891 1340 Pfam PAZ domain 775 899 IPR003100 GO:0005515
Vvi4g891 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 455 IPR027417 -
Vvi4g891 1340 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 486 IPR001650 -
Vvi4g891 1340 Gene3D Ribonuclease III domain 915 1073 IPR036389 GO:0004525|GO:0006396
Vvi4g891 1340 SUPERFAMILY RNase III domain-like 923 1074 IPR036389 GO:0004525|GO:0006396
Vvi4g891 1340 Pfam Type III restriction enzyme, res subunit 5 137 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi4g891 1340 ProSitePatterns Ribonuclease III family signature. 1131 1139 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 CDD RIBOc 1110 1264 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 ProSiteProfiles Ribonuclease III family domain profile. 903 1059 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 155 IPR014001 -
Vvi4g891 1340 SMART helicmild6 352 439 IPR001650 -
Vvi4g891 1340 Gene3D - 313 470 IPR027417 -
Vvi4g891 1340 Pfam Helicase conserved C-terminal domain 331 437 IPR001650 -
Vvi4g891 1340 ProSiteProfiles PAZ domain profile. 779 877 IPR003100 GO:0005515
Vvi4g891 1340 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 507 593 IPR005034 GO:0016891
Vvi4g891 1340 Gene3D Ribonuclease III domain 1091 1268 IPR036389 GO:0004525|GO:0006396
Vvi4g891 1340 PANTHER DICER-RELATED 587 1332 - -
Vvi4g891 1340 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1268 1333 IPR014720 -
Vvi4g891 1340 Pfam Dicer dimerisation domain 507 586 - -
Vvi4g891 1340 Pfam Ribonuclease III domain 1131 1241 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 Pfam Ribonuclease III domain 941 1059 IPR000999 GO:0004525|GO:0006396
Vvi4g891 1340 SMART PAZ_2_a_3 754 903 IPR003100 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g891 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - vvi:100258190 2654.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0959 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006712 0 4 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 2 0 1 1 38