Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g894 | ATGGCTTCCATGAACAACTGGTTGGGTTTCTCTTTGTCCCCTCGAGAACTTCCACCACAGCCTGAAAATCACTCACAGAACAGTGTCTCTAGACTTGGTTTCAACTCTGATGAAATCTCTGGGACTGATGTGTCAGGTGAGTGTTTTGATCTCACTTCAGATTCCACTGCTCCCTCTCTCAACCTCCCTCCCCCTTTTGGGATACTTGAAGCATTCAACAGGAATAATCAGCCCCAAGATTGGAACATGAAGGGTTTGGGCATGAATTCAGATACTAACTACAAAACCACCACTTCTGAGCTCTCCATGCTCATGGGTAGTTCATGCAGTAGTCATCATAACCTCGAAAACCAAGAACCCAAACTTGAAAATTTCCTGGGCTGCCGCTCTTTTGCTGATCATGAGCAGAAACTTCAAGGGTGTAACTCCATTGCAGCAGCAGCTTATGATAGCTCTGCAGACTACATTTCCATTGGTTTATCCATGATCAAGACATGGCTGCGGAACCAACCTGCACCCACCCATCAGGATAACAACAAGAGTACTGATACTGGGCCTGTCGGTGGAGCCGCCGCTGGGAACCTACCCAATGCACAGACCTTATCGTTGTCCATGAGCACCGGCTCGCACCAGACCGGTGCCATTGAAACGGTGCCAAGGAAGTCCATTGATACATTTGGACAGAGGACATCCATATACCGTGGTGTAACAAGGCATAGATGGACGGGTAGATATGAGGCTCATCTATGGGACAACAGTTGCAGAAGAGAAGGACAAACTCGAAAGGGAAGGCAAGTTTATTTAGGTGGTTATGACAAAGAAGAAAAGGCAGCTAGGGCTTACGATTTAGCAGCACTGAAGTATTGGGGTACCACCACCACAACAAATTTCCCTATTAGCAACTATGAAAAAGAGATAGAGGAGATGAAGCACATGACAAGGCAGGAGTACGTAGCATCTCTGCGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCATCCATATATAGAGGAGTGACCAGACACCATCAGCATGGGAGATGGCAGGCAAGGATTGGAAGAGTCGCAGGCAACAAAGATCTTTACTTGGGAACTTTCAGCACCCAAGAGGAAGCAGCAGAGGCCTATGACATTGCTGCCATTAAGTTTCGAGGATTGAATGCGGTGACCAACTTTGATATGAGTAGATATGATGTTAATAGCATTCTAGAGAGCAGTACCTTGCCGATTGGTGGAGCTGCAAAGCGCTCAGGCTCCAATTCAGTCATCTATAGCGGTGGGGTAGGTTATGGGAACAACATTGGCTTTGTGATGCCCATAAGCACCGTCATCGCTCATGAAGGCGGCCATGGCCAGGGAAATGGTGGCTTTGGAGATAGCGAAGTGAAGGCGATTGGTTACGACAACATGTTTGGATCGACAGATCCTTACCATGCTAGGAGCTTGTACTATCTTTCACAGCAATCATCTGCAGGCATGGTGAAGGGCAGTAGTGCATATGATCAGGGGTCAGGCTTGGCAGTATGCCATGGAACACCTACATTCACAGTATGGAATGATACATAA | 1563 | 47.41 | MASMNNWLGFSLSPRELPPQPENHSQNSVSRLGFNSDEISGTDVSGECFDLTSDSTAPSLNLPPPFGILEAFNRNNQPQDWNMKGLGMNSDTNYKTTTSELSMLMGSSCSSHHNLENQEPKLENFLGCRSFADHEQKLQGCNSIAAAAYDSSADYISIGLSMIKTWLRNQPAPTHQDNNKSTDTGPVGGAAAGNLPNAQTLSLSMSTGSHQTGAIETVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVNSILESSTLPIGGAAKRSGSNSVIYSGGVGYGNNIGFVMPISTVIAHEGGHGQGNGGFGDSEVKAIGYDNMFGSTDPYHARSLYYLSQQSSAGMVKGSSAYDQGSGLAVCHGTPTFTVWNDT* | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 17380959 | 17385152 | + | Vvi4g894 | Vvi4g894 | 785673 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g894 | 520 | PRINTS | Ethylene responsive element binding protein signature | 233 | 244 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | PRINTS | Ethylene responsive element binding protein signature | 374 | 394 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | ProSiteProfiles | AP2/ERF domain profile. | 232 | 298 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | MobiDBLite | consensus disorder prediction | 11 | 36 | - | - | |
| Vvi4g894 | 520 | CDD | AP2 | 333 | 394 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | PANTHER | BNAC02G44180D PROTEIN | 6 | 210 | - | - | |
| Vvi4g894 | 520 | PANTHER | BNAC02G44180D PROTEIN | 212 | 415 | - | - | |
| Vvi4g894 | 520 | MobiDBLite | consensus disorder prediction | 18 | 36 | - | - | |
| Vvi4g894 | 520 | SUPERFAMILY | DNA-binding domain | 333 | 394 | IPR016177 | GO:0003677 | |
| Vvi4g894 | 520 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
| Vvi4g894 | 520 | SUPERFAMILY | DNA-binding domain | 231 | 300 | IPR016177 | GO:0003677 | |
| Vvi4g894 | 520 | MobiDBLite | consensus disorder prediction | 171 | 195 | - | - | |
| Vvi4g894 | 520 | CDD | AP2 | 231 | 300 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | Pfam | AP2 domain | 334 | 384 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | Pfam | AP2 domain | 232 | 290 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | ProSiteProfiles | AP2/ERF domain profile. | 334 | 392 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 212 | 415 | - | - | |
| Vvi4g894 | 520 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 6 | 210 | - | - | |
| Vvi4g894 | 520 | Gene3D | AP2/ERF domain | 232 | 300 | IPR036955 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | Gene3D | AP2/ERF domain | 334 | 394 | IPR036955 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | SMART | rav1_2 | 232 | 304 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi4g894 | 520 | SMART | rav1_2 | 334 | 398 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 14791 | PF00847 | AP2 | 1.10E-12 | CL0081 | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g894 | K09285 | - | vvi:100241060 | 792.341 |