Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g894 ATGGCTTCCATGAACAACTGGTTGGGTTTCTCTTTGTCCCCTCGAGAACTTCCACCACAGCCTGAAAATCACTCACAGAACAGTGTCTCTAGACTTGGTTTCAACTCTGATGAAATCTCTGGGACTGATGTGTCAGGTGAGTGTTTTGATCTCACTTCAGATTCCACTGCTCCCTCTCTCAACCTCCCTCCCCCTTTTGGGATACTTGAAGCATTCAACAGGAATAATCAGCCCCAAGATTGGAACATGAAGGGTTTGGGCATGAATTCAGATACTAACTACAAAACCACCACTTCTGAGCTCTCCATGCTCATGGGTAGTTCATGCAGTAGTCATCATAACCTCGAAAACCAAGAACCCAAACTTGAAAATTTCCTGGGCTGCCGCTCTTTTGCTGATCATGAGCAGAAACTTCAAGGGTGTAACTCCATTGCAGCAGCAGCTTATGATAGCTCTGCAGACTACATTTCCATTGGTTTATCCATGATCAAGACATGGCTGCGGAACCAACCTGCACCCACCCATCAGGATAACAACAAGAGTACTGATACTGGGCCTGTCGGTGGAGCCGCCGCTGGGAACCTACCCAATGCACAGACCTTATCGTTGTCCATGAGCACCGGCTCGCACCAGACCGGTGCCATTGAAACGGTGCCAAGGAAGTCCATTGATACATTTGGACAGAGGACATCCATATACCGTGGTGTAACAAGGCATAGATGGACGGGTAGATATGAGGCTCATCTATGGGACAACAGTTGCAGAAGAGAAGGACAAACTCGAAAGGGAAGGCAAGTTTATTTAGGTGGTTATGACAAAGAAGAAAAGGCAGCTAGGGCTTACGATTTAGCAGCACTGAAGTATTGGGGTACCACCACCACAACAAATTTCCCTATTAGCAACTATGAAAAAGAGATAGAGGAGATGAAGCACATGACAAGGCAGGAGTACGTAGCATCTCTGCGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCATCCATATATAGAGGAGTGACCAGACACCATCAGCATGGGAGATGGCAGGCAAGGATTGGAAGAGTCGCAGGCAACAAAGATCTTTACTTGGGAACTTTCAGCACCCAAGAGGAAGCAGCAGAGGCCTATGACATTGCTGCCATTAAGTTTCGAGGATTGAATGCGGTGACCAACTTTGATATGAGTAGATATGATGTTAATAGCATTCTAGAGAGCAGTACCTTGCCGATTGGTGGAGCTGCAAAGCGCTCAGGCTCCAATTCAGTCATCTATAGCGGTGGGGTAGGTTATGGGAACAACATTGGCTTTGTGATGCCCATAAGCACCGTCATCGCTCATGAAGGCGGCCATGGCCAGGGAAATGGTGGCTTTGGAGATAGCGAAGTGAAGGCGATTGGTTACGACAACATGTTTGGATCGACAGATCCTTACCATGCTAGGAGCTTGTACTATCTTTCACAGCAATCATCTGCAGGCATGGTGAAGGGCAGTAGTGCATATGATCAGGGGTCAGGCTTGGCAGTATGCCATGGAACACCTACATTCACAGTATGGAATGATACATAA 1563 47.41 MASMNNWLGFSLSPRELPPQPENHSQNSVSRLGFNSDEISGTDVSGECFDLTSDSTAPSLNLPPPFGILEAFNRNNQPQDWNMKGLGMNSDTNYKTTTSELSMLMGSSCSSHHNLENQEPKLENFLGCRSFADHEQKLQGCNSIAAAAYDSSADYISIGLSMIKTWLRNQPAPTHQDNNKSTDTGPVGGAAAGNLPNAQTLSLSMSTGSHQTGAIETVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVNSILESSTLPIGGAAKRSGSNSVIYSGGVGYGNNIGFVMPISTVIAHEGGHGQGNGGFGDSEVKAIGYDNMFGSTDPYHARSLYYLSQQSSAGMVKGSSAYDQGSGLAVCHGTPTFTVWNDT* 521
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 17380959 17385152 + Vvi4g894 Vvi4g894 785673
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g894 520 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 PRINTS Ethylene responsive element binding protein signature 374 394 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 ProSiteProfiles AP2/ERF domain profile. 232 298 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 MobiDBLite consensus disorder prediction 11 36 - -
Vvi4g894 520 CDD AP2 333 394 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 PANTHER BNAC02G44180D PROTEIN 6 210 - -
Vvi4g894 520 PANTHER BNAC02G44180D PROTEIN 212 415 - -
Vvi4g894 520 MobiDBLite consensus disorder prediction 18 36 - -
Vvi4g894 520 SUPERFAMILY DNA-binding domain 333 394 IPR016177 GO:0003677
Vvi4g894 520 MobiDBLite consensus disorder prediction 171 185 - -
Vvi4g894 520 SUPERFAMILY DNA-binding domain 231 300 IPR016177 GO:0003677
Vvi4g894 520 MobiDBLite consensus disorder prediction 171 195 - -
Vvi4g894 520 CDD AP2 231 300 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 Pfam AP2 domain 334 384 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 Pfam AP2 domain 232 290 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 ProSiteProfiles AP2/ERF domain profile. 334 392 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 212 415 - -
Vvi4g894 520 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 210 - -
Vvi4g894 520 Gene3D AP2/ERF domain 232 300 IPR036955 GO:0003700|GO:0006355
Vvi4g894 520 Gene3D AP2/ERF domain 334 394 IPR036955 GO:0003700|GO:0006355
Vvi4g894 520 SMART rav1_2 232 304 IPR001471 GO:0003700|GO:0006355
Vvi4g894 520 SMART rav1_2 334 398 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14791 PF00847 AP2 1.10E-12 CL0081 Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g894 K09285 - vvi:100241060 792.341