Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g896 ATGAGGCTCATCTATGGGACAACAGTTGCAGAAGAGGACAAACTCGAAAGGGAAGGCAAGGAATGGTTAGTAGAAAAGGAGGGTTCTTTTATGCATTTTGCTTTTATCATTCTTTTATCAAACCTATATTTCTCTTCAGATTTCTTAACTACCACTTTTGGTACCACTACCACAACAAATTTCCCTGTAAGCTTCACCTTTGTGTCCCCATTTTCAGGGATGTTGAAGAGTAGCGGGTTTTCTCGTGGAGTATCCATATATAGAGGAGTGATCAGACACCACCAGCATGGGAGATGGCAGGCAAGGATTGGAAGAGTTGCAGGCAACAAAGATCTTGACTTGGGAACTTTCAGCACCCAGGAGGAAGCAGCAGAGGTCTATGACATTGCTGCCATTAAGTTCCAACATTTGAATGCGGTGACTAACTTTGACATGAGTAGATATGATGTTAATAGCATCCTAGAGAGCACGCATCACCATGGCGTGCCTACTGTTGCATTCCAACAAGCTCAGCCATTTAGCATGCACTACCCTTATGGCCATCAGCAGAGGGCTGTTTGGTGTAAGCAAGAACAAGACCCTGATGCCACACACAGCTTTCAAGATCTTCACCAACTACAATTGGGAAACACTCGCAACTTCTTCCAGCCTAATGTTCTGCACAACCTCATGAGCATGGACTCTTCTTCAATGAAACATAGCTCAGGTTCCAATTCAGTTATCTACAGTGGTGGTGGAGCCGCTGATGGCAGTGCTGCAACTGGCGGCGGCAGTGGGAGCTTCCAAGGGGTTGGCTATGGGAGCAACATTGGCTTTGTGATGCCAATAAGCACAGTCATCGCTCATGAAAGCAGCCATGGCCAGGGAAATGGCAGCTTTGGAGATAGCAAAGTGAAGGCAATTGGTTATGACAACATATTTGGATCGACAGATCCTTACCATGCTAGGAGCTTGTACTATCTCTCACAGCAATCATCTGCAGGCATGGTTAAGGGCAGTAGTGCATATGATCAAGGGTCAGGGTGTACCAACTGGGTTCCAGCCCTAGTTCCACTAACAACATGGCAGTATGCCATGGAGCACCTGCATTCACAGTATGGAATGATACATAAAGCTTGGAAGAATGGAAGAAGAGATCAGATATGGGGGAAGAGGTAG 1158 46.03 MRLIYGTTVAEEDKLEREGKEWLVEKEGSFMHFAFIILLSNLYFSSDFLTTTFGTTTTTNFPVSFTFVSPFSGMLKSSGFSRGVSIYRGVIRHHQHGRWQARIGRVAGNKDLDLGTFSTQEEAAEVYDIAAIKFQHLNAVTNFDMSRYDVNSILESTHHHGVPTVAFQQAQPFSMHYPYGHQQRAVWCKQEQDPDATHSFQDLHQLQLGNTRNFFQPNVLHNLMSMDSSSMKHSSGSNSVIYSGGGAADGSAATGGGSGSFQGVGYGSNIGFVMPISTVIAHESSHGQGNGSFGDSKVKAIGYDNIFGSTDPYHARSLYYLSQQSSAGMVKGSSAYDQGSGCTNWVPALVPLTTWQYAMEHLHSQYGMIHKAWKNGRRDQIWGKR* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17388143 17391078 + Vvi4g896 Vvi4g896 785675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g896 385 SUPERFAMILY DNA-binding domain 85 146 IPR016177 GO:0003677
Vvi4g896 385 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Vvi4g896 385 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Vvi4g896 385 CDD AP2 85 146 IPR001471 GO:0003700|GO:0006355
Vvi4g896 385 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Vvi4g896 385 Pfam AP2 domain 86 133 IPR001471 GO:0003700|GO:0006355
Vvi4g896 385 PANTHER BNAC02G44180D PROTEIN 53 157 - -
Vvi4g896 385 PANTHER BNAC02G44180D PROTEIN 160 249 - -
Vvi4g896 385 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 157 - -
Vvi4g896 385 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 160 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g896 K09285 OVM, ANT; AP2-like factor, ANT lineage - vvi:100241060 463.766
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007633 1 1 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 1 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14792 PF00847 AP2 1.60E-06 CL0081 Vvi TF