Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g897 ATGGAAGTACTTCCTTGTTCTGGAGTTCAGTATGTTGGAGAATCTGATTGTCCTCAACAGAGTCCAGGAACAACTTTTATATATGATGGAGATTCAAACTGTGTTGAACATGGACAACAAGTTCAATTGGCAGATGATAAAATGGATAAATTATTGCTAAATGCGGAAAGATCTCAGAAAGAAAAAAAGGGTGAAGTCGAAGGGAGGGTTGAGGAGCTGCCTACTTCAGAGGGTCACTGTAGTGGAGCTTTGTATTTTGATTGTGAGGTGGAGGACCAAAAGCAACCTTGTAATTCTCTATATTTTGAAGATGGCAACTTAAATGTGCAGAATGGTTGCACAGAACCTTGCTTAGCCTCTGATAGCTCTCATCTCATTGTGGATACCATTGAGAGTGAACTGCCAAGCAACACTGGGGAGGGGGAGTTGTCTGTTTCAGAGCCCAAGTGGCTAGAACAAGATGAGACCGTGGCATTATGGGTCAAGTGGCGAGGGAAATGGCAAGCAGGAATCAGATGCTCAAGGGCTGATTGGCCATTATCAACTTTGAAAGCGAAGCCAACTCATGACAGGAAGAAGTATGTTGTCATATTTTTTCCTCACACAAGAATTTATTCTTGGGCAGATATTCTTCTTGTGTGCCCAATTAATAAGTTTCCACAGCCCATTGCACACAAGACACATAATGTTGGATTGGAAATGGTTAAAGATTTGACTATTGCACGCCGTTTTATCATGCAAAAGTTAGCTGTTGGCATGCTACATATCAGCGATCAATTACATATTGAGGCCCTGACAGAGAATGTTCGTAATGTGATGTCCTGGAAGGAATTTGCAATGGAAGCTTCCCGCTGTAAAGGGTATTCTGATCTTGGAAGAATGCTTCCAAGGCTTCAGAGTATGATATTGATGAACTACATAAGTCCTGACTGGGTACAACATTCTTTTCGATCTTGGGTAGAACGGTGTCATAGTGCAGATAGTGCTGAATCTGTTGAAATACTGAAGGAGGAATTGTTTGGTTCCATTCTGTGGAATGAAGTCAGCTCACTCTGGGATGCACCAGTGCAACCTGAGTTGGGTTCTGAGTGGAAGACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACATCTCATCCCATCTCTAGCAGTGGAGACATAAAACAACAGAGCGGTGATAACCCCTTGACCTCAAGCCTCCAAATTAACAGGAAGAGGCCCAAGCTTGAAGTTCGTCGTGCAGAGACCCATGCTTCAGTGGTTGAGACAGGGGGTTTACATCAGGCTGTAACTGTCGACATTGATTCCGGATTTTTTGATAGTCGAGATATAGTGCATGATGCTCCATCAGCATCTGAACCTTATAAGGAGGAAGTTTTTGGGGAGGGAGCTGTAACAACAAATTCTCCAGGTAGTGCCACTGATAGATGGAATGAAATTGTAGTGGTTGCTAAGAAATCCTTGGATCCTGGGAACAAAAATCGCCAATGTATAGCTTTTATTGAAGCAAAAGGTAGACAATGTGTGAGGTGGGCAAATGATGGTGATGTGTATTGTTGTGTGCATTTGGCCTCTCGTTTTGTGGGGAACTCTGCAAAAGCAGATGTAGCTCCCCCTGTTGATATGCCAATGTGTGAAGGTACCACAACTCTTGGCACTCGATGCAAGCATCGGTCTCTCTATGGCTCCTCATTCTGTAAGAAACACAGACCCCAGAGTGACACAAAAAGGACCTTGACTTCACCAGAGAATAAACTTAAGAGAAAACATGAGGAGAATATATCAATTTCAGAAACCACACTATGTAAAGATATAATATTGGTGGGTGAAGTTGAAAACCCTCTCCAAAGAAAACATAACTTGATTGAGAATCCTGAGTATTCTAGTAAAGGGTATATGAACGCAGAGGTACTGCACTGCATTGGCTCACGCCCTGAAGATGGTGGTGATCCTTGCTTGGAAAGTCCAAAGCGACATTCATTGTACTGTGAAAAACACCTTCCGAGCTGGCTTAAACGTGCTAGGAATGGTAAAAGCAGAATAATTTCAAAAGAAGTGTTTATAGATCTTTTAAGAAATTGCTGTTCACAGGAGCAAAAATTGCATTTGCATCAAGCATGTGAGCTTTTCTACAGACTCTTCAAAAGTATTCTGTCCTTGAGAAACCCAGTTCCTAGGGAAGTCCAACTTCAATGGGCACTGTCTGAAGCTTCTAAAGAATCTGGTGTTGGGGAATTCTTGACAAAGTTGGTTTGCAGTGAAAAAGATAAGCTCATGAGACTCTGGGGCTTTAATGCTGATACTGATGTACAAGTTTCCTCCTCTGAGTTTCCTGATGACCAAGCAATAGGCAAACACTGGATGGACAATCATAAAAAGGAATCTCAATGGTTGTTCAGAGGTTATGCTTGTGCCATCTGCCTGGATTCTTTTACAAACAGGAAAGTTCTGGAAAGTCATGTGCAGGACAGACACCATGTTCAGTTTGTTGAACAATGCATGCTTTTCCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATACGGAAGCATTGTGGTTGCATGTGGTCTCAGTTCATCCTGTTGATTTTAGGCTGTCAACAGTTACTCAACAGCATAATAATCACACTGAGGGTCAAGGTGGTTTCCGGAAGTTCATTTGTAGGTTTTGTGGGTTGAAGTTTGATCTGCTTCCTGATCTTGGCCGCCACCATCAAGCTGCTCATATGGGGCCAAATCTAGTTAGCTCTCGCCCTGGAAAGAAGGGGGTTCGTTATTATGCTTATAGATTAAAATCAGGGAGGCTTAGCCAAACGCATCCAGGCATCTACTTCAACCAGTTCTGGGGGACTAAGAGCACCTTCTCATCATTACTGGAGGGGAAGTATGGAGTTTTGCCAGAACGGTTGTATCTGAAGGCGGCCAAACTCTGTAGTGAACATAATATTCAAGTGAGCTGGCATCAAGATGGGTTTGTTTGCCCTAATGGATGCAAACCTGTGTCAAACGCACATTTACCGTCTCTGCTGATGCCACACTCAAATGGTTCTATTGGGCATGGCTCTGCATCATTAGATCCTGTGAGTGAGGAGTGGGAAATGGATGAGTGCCATTATGTCATTGATTCACATGGTTCTGATGGCCAAATCACCAGATACTCCATGCCTTGGGAGAGCTTTACCTATGTCACAAAGCCATTGCTTGACCAGTCCCTTGGTCTTGATGCAGAGAGTTGGCAATTGGGTTGTGCTTGTCTACACTCAACTTGCTCTCCTGAAAGATGTGATCACGTATACCTCTTTGATAATGACTATTCAGATGCAAAGGATATATATGGGAAACCCATGAGTGGCAGATTCCCATATGATGAAAAAGGACGGATTATCTTGGAGGAGGGTTACCTTGTCTATGAGTGCAATGGCAAGTGCAGCTGCAACAGAACATGTCAGAATAGGGTTTTGCAGAATGGAGTGCGAGTAAAGTTGGAAGTCTTTAGAACAGAGGAAAAGGGTTGGGCAGTCAGGGCAGGTGAAGCAATCCTTCGGGGTACGTTCATATGTGAGTACATTGGAGAGGTTTTAAGTGAGCAAGAAGCAGACAAGAGGGGCAACAATAGGCATGGTGAAGAAGGTTGCAGCTATTTTTATGACATCGACTCTCATATCAATGATATGAGCAGATTGGTAGAAGGACAGGTTCCTTATGTAATTGATGCTACAAGATATGGAAATGTTTCACGGTTCATCAATCACAGCTGCTCACCAAACCTCATTAATCACCAAGTTCTTGTGGAAAGCATGGATTGTCAGCTTGCACATATTGGTCTCTTTGCAAATCGAGATATATCTTTGGGTGAAGAACTGACGTATGATTATCGATATAAACCACTGCCTGGAGAAGGATACCCATGTCATTGTGGAGCTTCCAAGTGCCGTGGTCGTCTTCACTAG 3948 43.14 MEVLPCSGVQYVGESDCPQQSPGTTFIYDGDSNCVEHGQQVQLADDKMDKLLLNAERSQKEKKGEVEGRVEELPTSEGHCSGALYFDCEVEDQKQPCNSLYFEDGNLNVQNGCTEPCLASDSSHLIVDTIESELPSNTGEGELSVSEPKWLEQDETVALWVKWRGKWQAGIRCSRADWPLSTLKAKPTHDRKKYVVIFFPHTRIYSWADILLVCPINKFPQPIAHKTHNVGLEMVKDLTIARRFIMQKLAVGMLHISDQLHIEALTENVRNVMSWKEFAMEASRCKGYSDLGRMLPRLQSMILMNYISPDWVQHSFRSWVERCHSADSAESVEILKEELFGSILWNEVSSLWDAPVQPELGSEWKTWKHEVMKWFSTSHPISSSGDIKQQSGDNPLTSSLQINRKRPKLEVRRAETHASVVETGGLHQAVTVDIDSGFFDSRDIVHDAPSASEPYKEEVFGEGAVTTNSPGSATDRWNEIVVVAKKSLDPGNKNRQCIAFIEAKGRQCVRWANDGDVYCCVHLASRFVGNSAKADVAPPVDMPMCEGTTTLGTRCKHRSLYGSSFCKKHRPQSDTKRTLTSPENKLKRKHEENISISETTLCKDIILVGEVENPLQRKHNLIENPEYSSKGYMNAEVLHCIGSRPEDGGDPCLESPKRHSLYCEKHLPSWLKRARNGKSRIISKEVFIDLLRNCCSQEQKLHLHQACELFYRLFKSILSLRNPVPREVQLQWALSEASKESGVGEFLTKLVCSEKDKLMRLWGFNADTDVQVSSSEFPDDQAIGKHWMDNHKKESQWLFRGYACAICLDSFTNRKVLESHVQDRHHVQFVEQCMLFQCIPCGSHFGNTEALWLHVVSVHPVDFRLSTVTQQHNNHTEGQGGFRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVSSRPGKKGVRYYAYRLKSGRLSQTHPGIYFNQFWGTKSTFSSLLEGKYGVLPERLYLKAAKLCSEHNIQVSWHQDGFVCPNGCKPVSNAHLPSLLMPHSNGSIGHGSASLDPVSEEWEMDECHYVIDSHGSDGQITRYSMPWESFTYVTKPLLDQSLGLDAESWQLGCACLHSTCSPERCDHVYLFDNDYSDAKDIYGKPMSGRFPYDEKGRIILEEGYLVYECNGKCSCNRTCQNRVLQNGVRVKLEVFRTEEKGWAVRAGEAILRGTFICEYIGEVLSEQEADKRGNNRHGEEGCSYFYDIDSHINDMSRLVEGQVPYVIDATRYGNVSRFINHSCSPNLINHQVLVESMDCQLAHIGLFANRDISLGEELTYDYRYKPLPGEGYPCHCGASKCRGRLH* 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17398365 17416188 + Vvi4g897 Vvi4g897 785676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g897 1315 Coils Coil 41 61 - -
Vvi4g897 1315 ProSiteProfiles Zinc finger C2H2 type domain profile. 836 859 IPR013087 -
Vvi4g897 1315 Pfam Pre-SET motif 1054 1151 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi4g897 1315 Gene3D SET domain 1048 1315 IPR046341 -
Vvi4g897 1315 Pfam SET domain 1170 1291 IPR001214 GO:0005515
Vvi4g897 1315 ProSiteProfiles Zinc finger C2H2 type domain profile. 885 913 IPR013087 -
Vvi4g897 1315 ProSiteProfiles Zinc finger C2H2 type domain profile. 802 825 IPR013087 -
Vvi4g897 1315 SMART set_7 1159 1298 IPR001214 GO:0005515
Vvi4g897 1315 SMART c2h2final6 802 825 IPR013087 -
Vvi4g897 1315 SMART c2h2final6 885 908 IPR013087 -
Vvi4g897 1315 SMART c2h2final6 836 859 IPR013087 -
Vvi4g897 1315 Gene3D Classic Zinc Finger 798 880 - -
Vvi4g897 1315 SUPERFAMILY SET domain 1053 1312 IPR046341 -
Vvi4g897 1315 ProSiteProfiles Post-SET domain profile. 1299 1315 IPR003616 -
Vvi4g897 1315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 951 1043 - -
Vvi4g897 1315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1043 1315 - -
Vvi4g897 1315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 938 - -
Vvi4g897 1315 ProSitePatterns Zinc finger C2H2 type domain signature. 838 859 IPR013087 -
Vvi4g897 1315 ProSitePatterns Zinc finger C2H2 type domain signature. 887 908 IPR013087 -
Vvi4g897 1315 ProSiteProfiles Pre-SET domain profile. 1080 1156 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi4g897 1315 ProSiteProfiles SET domain profile. 1159 1292 IPR001214 GO:0005515
Vvi4g897 1315 Pfam Zinc finger C2H2-type, 3 repeats 804 876 IPR040689 -
Vvi4g897 1315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1043 1315 - -
Vvi4g897 1315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 951 1043 - -
Vvi4g897 1315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 938 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g897 - - - vvi:100251309 1895.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14793 PF00856 SET 7.40E-21 No_clan Vvi TR