Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g899 ATGGCTGAAATTAGACTTACCAAGGTAGAACAGGGTCAAACCAAAATCAGAAATGTTCCAATTGCTGTGACCCCGGAAGGTTTTTGGTGTTGCCCCTCGCCTGTTGTTTTCCAAAAGACTCTCAAAGCTCAAAACCCTCTAAACAAACCCAAATCCTCACCCCCACCACCCACCAAGACCTCTGTTCAGAAGAAGCAGGCCCCAATGACTGAGAGAAAACCGACTTCCACTCCATCAAGGCCAGGAGTTGTTTCTGATGATCAAAGAACTTTTGCTTCTGATGCCCCTGCTCTAAGTGCATTGGTTAATGAGAGGGCCCCAAGGCCCAAGATCGAAAATTTACCTAGGAAGGTGGCAATCGAGTTTGGTGAACCTGGAACCAGTGATATGAAAGTGATCTTAATGGGAAAGCAGGGGTTTTATGTGAAGTTGAGTGTTCACAAGAACGTTCTCATGGAAAATAGCAGTTTTTTTGCAGACAAACTTTCTGAAGAACAGTCTAATTTGTCCTGTCTTGAAATCGAGGATTGTGAAGACATTGAAATTTATGTTGAAACGGTGGGATTGATGTATTGTAAAGAAACCAAGCAACGGTTGATCAAACAAAGTGTCTCACGGGTACTTCGTATTCTCAAGGTTGCAGAGCTACTTGGCTTCAACTCATGCATGCAATCATGTTTGGAGTATTTAGAGGCAGTCCCTTGGGTTGGTGAAGAAGAAGAAGAAAAGGTGGTTTCTTCGGTTCTGCAACTCCAGGTAGAGGGTATTGGGGTCACCCCAGTACTGAAACGAGTCTCTTCTGAAGTCAGTAACTGCCCGAAGGACACACTCTTCCACATAATGGAACTGGTTCTAAAGAGTAGTGAGGAGAGAGGCCGACGTGAGATGAAATCTATAGTCCTGAAGCTCCTTCGAGAAAATAGCAGTGTCCCCAGCTATGCGGGTTCAGCTGACATCTGCAATGAAACTATTTATAGCTCATGCAGAAGCTGCTTGGATTCATTATTATCTATGTTCAGGCAAGCTGCTGAACCAGGGTTTACTGATAAACCCATGGAAAACAAAGAACCTGTGTTGAAGCAGATAACTTTGGAGGCTGATAACCTCTCATGGTTACTTGAAATTTTAGCTGACAGGCAAGCAGCAGATGAGTTTGCAGTGATGTGGGCTAGCCAGCAAGAGTTAGCAACCCTACATACAAAGCTTCCTGTTGTCTCTCGCCACCATGTTAGCTGCATTACGGCAAGGCTATTTGTTGGAATAGGAAGGGGGGAGCTGCTACCGTCAAAAGACACCCGTCAGTTGTTGTTACAGACCTGGTTGCAGCCTTTGATCAATGACTACAGCTGGTTACAACATGGGTGTAGGTCATTTGACAGGAAGGTTGTAGAGGAAGGAATTGGTAGGACAATCCTGACACTGCCTCTAGAGGATCAGCAGAGTATTTTGCTTGCTTGGTTGGGCAGTTTTCTAAAGGCTGGTGATAACTGCCCAAATCTTCAGAGGGCCTTTGAGGTCTGGTGGCGGAGAACTTTCGTTAGACCTTATGTTGAACCCCAAGGAAATCTAATGTAG 1575 45.08 MAEIRLTKVEQGQTKIRNVPIAVTPEGFWCCPSPVVFQKTLKAQNPLNKPKSSPPPPTKTSVQKKQAPMTERKPTSTPSRPGVVSDDQRTFASDAPALSALVNERAPRPKIENLPRKVAIEFGEPGTSDMKVILMGKQGFYVKLSVHKNVLMENSSFFADKLSEEQSNLSCLEIEDCEDIEIYVETVGLMYCKETKQRLIKQSVSRVLRILKVAELLGFNSCMQSCLEYLEAVPWVGEEEEEKVVSSVLQLQVEGIGVTPVLKRVSSEVSNCPKDTLFHIMELVLKSSEERGRREMKSIVLKLLRENSSVPSYAGSADICNETIYSSCRSCLDSLLSMFRQAAEPGFTDKPMENKEPVLKQITLEADNLSWLLEILADRQAADEFAVMWASQQELATLHTKLPVVSRHHVSCITARLFVGIGRGELLPSKDTRQLLLQTWLQPLINDYSWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQSILLAWLGSFLKAGDNCPNLQRAFEVWWRRTFVRPYVEPQGNLM* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17420698 17425264 + Vvi4g899 Vvi4g899 785678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g899 524 PANTHER BTB/POZ DOMAIN PROTEIN 1 522 - -
Vvi4g899 524 CDD BTB_POZ_ZBTB_KLHL-like 128 217 - -
Vvi4g899 524 MobiDBLite consensus disorder prediction 58 86 - -
Vvi4g899 524 Gene3D Potassium Channel Kv1.1; Chain A 118 232 IPR011333 -
Vvi4g899 524 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 522 IPR038920 -
Vvi4g899 524 SUPERFAMILY POZ domain 143 230 IPR011333 -
Vvi4g899 524 MobiDBLite consensus disorder prediction 45 87 - -
Vvi4g899 524 Pfam BTB/POZ domain 142 231 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g899 - - - vvi:100252985 996.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14794 PF00651 BTB 0.0001 CL0033 Vvi TR