Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g90 ATGGGTGAGGAGGAGGGAGATGAGGGTGACCTAAGATCAAGAACGAGAGCATCAGGGCCGCCCAAATGGCTGACCAGCTTCCAGAAAGATCTGACGGCGGGAGCGGTGATGGGGGGTGTGGTGCACACGATCGTGGCCCCAATTGAGAGAGCCAAGCTTCTGCTGCAGACCCAGGAGAGCAACGTTGCTATCATCGCCGGCCGCCACCGGAGGTTCAAGGGCATGTGCGATTGTATCGTTCGTACGGTCAGGGAAGAGGGCATTCTCTCTCTGTGGAGGGGCAATGGGAGTAGCGTTTTACGTTATTACCCCTCCGTTGCTCTCAATTTCTCCCTTAAGGATCTTTACAAGAATATGCTGAGGTGCAGCAATTCTCTAGATGGTCATGTTACATATGGTGTGTCTGCCAACTTCATAGCAGGCGCTGCTGCAGGTTGTACAACACTAATTATCATCTACCCACTTGATATTGCACACACCCGCCTCGCTGCAGATGTTGGAAAAACTGAAGCTCGTCAGTTCCGTGGAATCTACCATTTCCTGAATACCATACTGAAGAAAGATGGGATTCAAGGGATCTACAGGGGGCTTCCTGCCTCCCTACATGGAATGGTTGTTCACAGGGGCCTTTACTTTGGGGGTTTTGACACAATCAAAGAAATGCTCTCAGAAGAATCCAAACCAGAGTTGGCATTATGGAAACGATGGGCGGCAGCACAAGCAGTGACAACATCTGCAGGGCTGTTGTCGTATCCATTGGACACAGTTCGAAGGCGAATGATGATGCAGTCAGGCTTGGAACGACCCATGTACAGAAGCACCTTGGAGTGCTGGAGGACGATCTATAGAACAGAGGGGGTGGCTTCATTTTACCGTGGGGCGGTTTCAAACATGTTTAGGAGTACTGGGGGTGCTGCCATTTTGGTTTTGTACGATGAAGTGAAGAAGTTCATGAATTGGAGCGGATTCTAA 972 50.51 MGEEEGDEGDLRSRTRASGPPKWLTSFQKDLTAGAVMGGVVHTIVAPIERAKLLLQTQESNVAIIAGRHRRFKGMCDCIVRTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYKNMLRCSNSLDGHVTYGVSANFIAGAAAGCTTLIIIYPLDIAHTRLAADVGKTEARQFRGIYHFLNTILKKDGIQGIYRGLPASLHGMVVHRGLYFGGFDTIKEMLSEESKPELALWKRWAAAQAVTTSAGLLSYPLDTVRRRMMMQSGLERPMYRSTLECWRTIYRTEGVASFYRGAVSNMFRSTGGAAILVLYDEVKKFMNWSGF* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 935961 939236 - Vvi4g90 Vvi4g90 784869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g90 323 Pfam Mitochondrial carrier protein 230 319 IPR018108 -
Vvi4g90 323 Pfam Mitochondrial carrier protein 26 121 IPR018108 -
Vvi4g90 323 Pfam Mitochondrial carrier protein 133 224 IPR018108 -
Vvi4g90 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 221 IPR018108 -
Vvi4g90 323 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 22 322 - -
Vvi4g90 323 Gene3D Mitochondrial carrier domain 29 320 IPR023395 -
Vvi4g90 323 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g90 323 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 22 322 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi4g90 323 PRINTS Adenine nucleotide translocator signature 27 39 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi4g90 323 PRINTS Adenine nucleotide translocator signature 72 93 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi4g90 323 PRINTS Adenine nucleotide translocator signature 105 117 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi4g90 323 PRINTS Adenine nucleotide translocator signature 132 145 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi4g90 323 PRINTS Adenine nucleotide translocator signature 235 251 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi4g90 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 317 IPR018108 -
Vvi4g90 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 119 IPR018108 -
Vvi4g90 323 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085
Vvi4g90 323 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085
Vvi4g90 323 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Vvi4g90 323 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Vvi4g90 323 PRINTS Mitochondrial carrier protein signature 194 212 IPR002067 GO:0055085
Vvi4g90 323 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Vvi4g90 323 SUPERFAMILY Mitochondrial carrier 25 313 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g90 K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 - vvi:100266251 651.744
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g90 Blo01g01462 . . . . . Bma04g00124 . . Cmo12g00580 . . . . . Cpe07g00561 . . . . . . . . . . . . . . . . . . Cone20ag0273 . . . . . . . . . . . . . . . . Cma12g00641 . Car05g00075 Cpe11g00070 . . . . . . . . . . . . . . . Lsi08g01591 . Chy03g01656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007060 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 37