Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g900 ATGAGCAAAGCTGAAAATGAAAAAAAGGGGGGGCAAAAAGGAAAAATTGAGAAAGCACCAACAAAGACCCATTTGATGCCTTCTCTTTTTCTCTTTACAACACCGCCTCTTCCACCTGTTTTCTCTCACTCAAAGGTCCACAACCCAATTCCGATCGCCCACAAGTCCAATTTTGCAAATTCTATGTCCCAAGACTTCCACCAAGGTATCTTCAGTTTCTCGAATGGGTTCGAGAGATCGGCGGTGACACACCAAGAACAGCAGCAGCAACAGCAGCACATAACACAGCAGATCCGGAGGGATAAGCTGAGGACAGCTGGGATGTTGTCTGAAATGTTCAATTTTGCAACGGCGAATCAAAACGTAAATAACCGTGACAGTCTAGCTCAGCATCATCATCAGATTTCAAGCATTAATGCGGACTCAGCTGCTGCCATGCAGCTTTTCCTCATGAATCCGCAACCCAGATCACCTTCTCCACCTCCACAACCCCATCCTCATCCCCATCCTCCTGCAACTTCTTCTACACTTCATATGCTGCTTCCAAACCAATCCACTTCCCTCCAAGGCTTTGCTACTGCTTCTGCACCAGGAGGGGGGGCTTTTGGAATTGTAGAAGGCCAAGGCCTTTCCTTGTCCCTATCCTCTTCATTGCAGCATTTGGAAGCAGCTAAAGCCGAGGAATTGAGGATGGGAGACAGCGGCATGCTGTTCTACGGCCAAGGAGGGGTGGGTCACAACCACCAAGTTCATGTCGGGTTTGGATCTTCATTGGGAGCGGTGAATGTTATGAGGAATTCCAAGTATGTGAAGGCTGCCCAAGAATTATTGGAAGAATTTTGCAGTGTTGGGAGGGGTCAGTTCAAGAAGAACAAGTTTGGGAGACACAACACCAACCCTAATTCTAATCCAGGTGGCGGCAGTGCTGGTGGAGGCGGCTCTTCATCCTCGTCAAAAGATCTTCCTCCTTTGTCAGCTGCTGATAGAATTGAGCATCAGAGAAGAAAGGTCAAACTATTATCCATGCTTGATGAGGCATGGAAGACAAATAGAAAATTCCGGCAAGTTTCCATGAATATTTTATACACCAGGGTGGATCGAAGATACAATCACTACTGTGAACAAATGCAAATGGTGGTGAACTCGTTTGATTTGGTGATGGGGTTCGGAGCGGCAGTTCCATACACGGCACTAGCGCAGAAGGCCATGTCCAGGCACTTCCGGTGTTTGAAGGATGCAATTGCAGTACAACTGAAGCACAGCTGCGAGCTGCTTGGAGAAAAAGATCCCTCGGGGACTTCAGGAGTGACCAAAGGAGAGACACCGAGGCTGAGGCTGTTGGAGCAAAGCCTCAGACAGCAAAGAGCCTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGATCCTGGCTTTTTGAGCACTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGTTTATCGAGAAATCAGGTCTCGAACTGGTTCATTAATGCCAGGGTCCGGTTGTGGAAACCCATGGTGGAGGAAATGTACCAGCAGGAAACGAAAGAAGAAGAGGGATCAGAAGAGAGAGAAGTGAATCAGCTGCAAAGTACCGATGGCGACCCTTCACTCATCGCAATCAATAGACAATGCTTCTCGGAAAACCAAGCAAAACAAGCCACCTCCACTATCCCCACCACTACCTCCACCTCCGCTGACGTGTCACCACCTCCACCCGTATCCCAATGTTTTCCGACCACCCATGACTCTGACCTGCACCATCGACTCCCTGTTGATGACACCTGTCGCCGCGGAAGCCTTGTTTCTTCTGATTTCGGGACCACCTCTACTAACCCTGACATTGGGTCAACACTCATAAGGTTCGGGACCACCGCCGGTGATGTCTCCCTCACTCTCGGCCTCCGCCACGCCGGCAACCTCCCGGACAAGAGTCCCTTCTCCGTTAGAGACTTCGGTGGCTGTTAA 2037 49.44 MSKAENEKKGGQKGKIEKAPTKTHLMPSLFLFTTPPLPPVFSHSKVHNPIPIAHKSNFANSMSQDFHQGIFSFSNGFERSAVTHQEQQQQQQHITQQIRRDKLRTAGMLSEMFNFATANQNVNNRDSLAQHHHQISSINADSAAAMQLFLMNPQPRSPSPPPQPHPHPHPPATSSTLHMLLPNQSTSLQGFATASAPGGGAFGIVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGMLFYGQGGVGHNHQVHVGFGSSLGAVNVMRNSKYVKAAQELLEEFCSVGRGQFKKNKFGRHNTNPNSNPGGGSAGGGGSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEAWKTNRKFRQVSMNILYTRVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAVQLKHSCELLGEKDPSGTSGVTKGETPRLRLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQETKEEEGSEEREVNQLQSTDGDPSLIAINRQCFSENQAKQATSTIPTTTSTSADVSPPPPVSQCFPTTHDSDLHHRLPVDDTCRRGSLVSSDFGTTSTNPDIGSTLIRFGTTAGDVSLTLGLRHAGNLPDKSPFSVRDFGGC* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17429917 17436016 - Vvi4g900 Vvi4g900 785679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g900 678 MobiDBLite consensus disorder prediction 154 171 - -
Vvi4g900 678 Pfam Associated with HOX 263 415 IPR006563 -
Vvi4g900 678 MobiDBLite consensus disorder prediction 575 596 - -
Vvi4g900 678 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g900 678 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 86 667 - -
Vvi4g900 678 MobiDBLite consensus disorder prediction 291 328 - -
Vvi4g900 678 MobiDBLite consensus disorder prediction 535 552 - -
Vvi4g900 678 MobiDBLite consensus disorder prediction 535 557 - -
Vvi4g900 678 MobiDBLite consensus disorder prediction 151 177 - -
Vvi4g900 678 SUPERFAMILY Homeodomain-like 469 535 IPR009057 -
Vvi4g900 678 CDD homeodomain 468 529 IPR001356 GO:0003677
Vvi4g900 678 Pfam Homeobox KN domain 485 524 IPR008422 GO:0003677|GO:0006355
Vvi4g900 678 ProSiteProfiles 'Homeobox' domain profile. 465 528 IPR001356 GO:0003677
Vvi4g900 678 SMART HOX_1 468 532 IPR001356 GO:0003677
Vvi4g900 678 Gene3D - 471 533 - -
Vvi4g900 678 SMART prehox3 258 416 IPR006563 -
Vvi4g900 678 MobiDBLite consensus disorder prediction 575 594 - -
Vvi4g900 678 MobiDBLite consensus disorder prediction 293 322 - -
Vvi4g900 678 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 667 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g900 Vvi18g877 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14795 PF07526 POX 7.60E-49 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g900 - - vvi:100261554 1022.31