Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g900 | ATGAGCAAAGCTGAAAATGAAAAAAAGGGGGGGCAAAAAGGAAAAATTGAGAAAGCACCAACAAAGACCCATTTGATGCCTTCTCTTTTTCTCTTTACAACACCGCCTCTTCCACCTGTTTTCTCTCACTCAAAGGTCCACAACCCAATTCCGATCGCCCACAAGTCCAATTTTGCAAATTCTATGTCCCAAGACTTCCACCAAGGTATCTTCAGTTTCTCGAATGGGTTCGAGAGATCGGCGGTGACACACCAAGAACAGCAGCAGCAACAGCAGCACATAACACAGCAGATCCGGAGGGATAAGCTGAGGACAGCTGGGATGTTGTCTGAAATGTTCAATTTTGCAACGGCGAATCAAAACGTAAATAACCGTGACAGTCTAGCTCAGCATCATCATCAGATTTCAAGCATTAATGCGGACTCAGCTGCTGCCATGCAGCTTTTCCTCATGAATCCGCAACCCAGATCACCTTCTCCACCTCCACAACCCCATCCTCATCCCCATCCTCCTGCAACTTCTTCTACACTTCATATGCTGCTTCCAAACCAATCCACTTCCCTCCAAGGCTTTGCTACTGCTTCTGCACCAGGAGGGGGGGCTTTTGGAATTGTAGAAGGCCAAGGCCTTTCCTTGTCCCTATCCTCTTCATTGCAGCATTTGGAAGCAGCTAAAGCCGAGGAATTGAGGATGGGAGACAGCGGCATGCTGTTCTACGGCCAAGGAGGGGTGGGTCACAACCACCAAGTTCATGTCGGGTTTGGATCTTCATTGGGAGCGGTGAATGTTATGAGGAATTCCAAGTATGTGAAGGCTGCCCAAGAATTATTGGAAGAATTTTGCAGTGTTGGGAGGGGTCAGTTCAAGAAGAACAAGTTTGGGAGACACAACACCAACCCTAATTCTAATCCAGGTGGCGGCAGTGCTGGTGGAGGCGGCTCTTCATCCTCGTCAAAAGATCTTCCTCCTTTGTCAGCTGCTGATAGAATTGAGCATCAGAGAAGAAAGGTCAAACTATTATCCATGCTTGATGAGGCATGGAAGACAAATAGAAAATTCCGGCAAGTTTCCATGAATATTTTATACACCAGGGTGGATCGAAGATACAATCACTACTGTGAACAAATGCAAATGGTGGTGAACTCGTTTGATTTGGTGATGGGGTTCGGAGCGGCAGTTCCATACACGGCACTAGCGCAGAAGGCCATGTCCAGGCACTTCCGGTGTTTGAAGGATGCAATTGCAGTACAACTGAAGCACAGCTGCGAGCTGCTTGGAGAAAAAGATCCCTCGGGGACTTCAGGAGTGACCAAAGGAGAGACACCGAGGCTGAGGCTGTTGGAGCAAAGCCTCAGACAGCAAAGAGCCTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGATCCTGGCTTTTTGAGCACTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGTTTATCGAGAAATCAGGTCTCGAACTGGTTCATTAATGCCAGGGTCCGGTTGTGGAAACCCATGGTGGAGGAAATGTACCAGCAGGAAACGAAAGAAGAAGAGGGATCAGAAGAGAGAGAAGTGAATCAGCTGCAAAGTACCGATGGCGACCCTTCACTCATCGCAATCAATAGACAATGCTTCTCGGAAAACCAAGCAAAACAAGCCACCTCCACTATCCCCACCACTACCTCCACCTCCGCTGACGTGTCACCACCTCCACCCGTATCCCAATGTTTTCCGACCACCCATGACTCTGACCTGCACCATCGACTCCCTGTTGATGACACCTGTCGCCGCGGAAGCCTTGTTTCTTCTGATTTCGGGACCACCTCTACTAACCCTGACATTGGGTCAACACTCATAAGGTTCGGGACCACCGCCGGTGATGTCTCCCTCACTCTCGGCCTCCGCCACGCCGGCAACCTCCCGGACAAGAGTCCCTTCTCCGTTAGAGACTTCGGTGGCTGTTAA | 2037 | 49.44 | MSKAENEKKGGQKGKIEKAPTKTHLMPSLFLFTTPPLPPVFSHSKVHNPIPIAHKSNFANSMSQDFHQGIFSFSNGFERSAVTHQEQQQQQQHITQQIRRDKLRTAGMLSEMFNFATANQNVNNRDSLAQHHHQISSINADSAAAMQLFLMNPQPRSPSPPPQPHPHPHPPATSSTLHMLLPNQSTSLQGFATASAPGGGAFGIVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGMLFYGQGGVGHNHQVHVGFGSSLGAVNVMRNSKYVKAAQELLEEFCSVGRGQFKKNKFGRHNTNPNSNPGGGSAGGGGSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEAWKTNRKFRQVSMNILYTRVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAVQLKHSCELLGEKDPSGTSGVTKGETPRLRLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQETKEEEGSEEREVNQLQSTDGDPSLIAINRQCFSENQAKQATSTIPTTTSTSADVSPPPPVSQCFPTTHDSDLHHRLPVDDTCRRGSLVSSDFGTTSTNPDIGSTLIRFGTTAGDVSLTLGLRHAGNLPDKSPFSVRDFGGC* | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17429917 | 17436016 | - | Vvi4g900 | Vvi4g900 | 785679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 154 | 171 | - | - | |
Vvi4g900 | 678 | Pfam | Associated with HOX | 263 | 415 | IPR006563 | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 575 | 596 | - | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vvi4g900 | 678 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 86 | 667 | - | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 291 | 328 | - | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 535 | 552 | - | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 535 | 557 | - | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 151 | 177 | - | - | |
Vvi4g900 | 678 | SUPERFAMILY | Homeodomain-like | 469 | 535 | IPR009057 | - | |
Vvi4g900 | 678 | CDD | homeodomain | 468 | 529 | IPR001356 | GO:0003677 | |
Vvi4g900 | 678 | Pfam | Homeobox KN domain | 485 | 524 | IPR008422 | GO:0003677|GO:0006355 | |
Vvi4g900 | 678 | ProSiteProfiles | 'Homeobox' domain profile. | 465 | 528 | IPR001356 | GO:0003677 | |
Vvi4g900 | 678 | SMART | HOX_1 | 468 | 532 | IPR001356 | GO:0003677 | |
Vvi4g900 | 678 | Gene3D | - | 471 | 533 | - | - | |
Vvi4g900 | 678 | SMART | prehox3 | 258 | 416 | IPR006563 | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 575 | 594 | - | - | |
Vvi4g900 | 678 | MobiDBLite | consensus disorder prediction | 293 | 322 | - | - | |
Vvi4g900 | 678 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 86 | 667 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14795 | PF07526 | POX | 7.60E-49 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g900 | - | - | vvi:100261554 | 1022.31 |