Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g901 ATGGATTGGCTAACCAAGATTCTAAAAGGCTCTGGCCATAAAATCTCAGAAGGCCAGTATCATGGGAGATATGGGGATGACAGAATTTGGGAAGAGCCGTCAACTCCTGTGGATGTATCCACAGATTTTGACCATGATGATCTTGCTGTTGCTATGGCTCGTTCCCTTGAAGATTACCCTGAGGAAGATCAGAAAGGGAAAAAAGTAGTTGATACTGAATCTCAATTGGAGGAAGATGAACAACTTGCTAGAGCTCTTCAAGAGAGTTTGAACGTGGAGTCTCCTCCTCGACATGATGCTGGAAATATATTTCAACCTTTTCCATCATTCTTTTCACCTGGTTATAGGATCTGTGCTGGGTGCAACTGCGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTTATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGGCAAGGGACACTAGATATCTATCACTTGATGATGGTAGGAAACTATGTCTGGAGTGTCTGGACTCTGCTATCATGGAAACTGTAGAGTGCCAGCCTCTTTACCTTGAAATACAAGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACTATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGGTTGCTGACTGGGTCGATCCTGGCTCACGAGATGATGCATGCATGGCTCCGACTGAAAGGATATCCAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGATTCAGAGATATATTCAAGTGCTGGTAGTGATGGTGCACGGTCTCAGTTTGAGAAGAAACTTGGTGAGTTTTTCAAACACCAGATAGAGACGGATAGTTCACCAGCTTATGGGGACGGATTTAGAGCAGGTAACCAAGCAGTGCAGAAGTACGGCCTCAAGAGTACCCTTGACCATATTCGGCTGACAGGAAGCTTTCCTTACTGA 1398 44.64 MDWLTKILKGSGHKISEGQYHGRYGDDRIWEEPSTPVDVSTDFDHDDLAVAMARSLEDYPEEDQKGKKVVDTESQLEEDEQLARALQESLNVESPPRHDAGNIFQPFPSFFSPGYRICAGCNCEIGHGRYLSCMGAVWHPECFRCRACGLPIFEHEFSMSGSHPYHKSCYKEQNHPKCDVCRNFIPTNAAGLIEYRAHPFWMQKYCPSHEHDGTPRCCSCERMEARDTRYLSLDDGRKLCLECLDSAIMETVECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVSTISGRPRIGTGYRIIDMMTEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLSQDVEEGICQVLAYMWLDSEIYSSAGSDGARSQFEKKLGEFFKHQIETDSSPAYGDGFRAGNQAVQKYGLKSTLDHIRLTGSFPY* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17449432 17456409 + Vvi4g901 Vvi4g901 785680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g901 465 Coils Coil 69 89 - -
Vvi4g901 465 Pfam Protein DA1 267 460 IPR022087 -
Vvi4g901 465 Pfam LIM domain 118 172 IPR001781 -
Vvi4g901 465 Gene3D Cysteine Rich Protein 111 176 - -
Vvi4g901 465 CDD LIM_DA1 118 170 - -
Vvi4g901 465 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Vvi4g901 465 PANTHER PROTEIN DA1-LIKE 1 465 - -
Vvi4g901 465 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 143 - -
Vvi4g901 465 PANTHER PROTEIN DA1-RELATED 2 1 465 IPR045218 -
Vvi4g901 465 SMART uim 77 96 IPR003903 -
Vvi4g901 465 SMART uim 43 62 IPR003903 -
Vvi4g901 465 MobiDBLite consensus disorder prediction 57 77 - -
Vvi4g901 465 SMART lim_4 117 169 IPR001781 -
Vvi4g901 465 ProSitePatterns LIM zinc-binding domain signature. 118 152 IPR001781 -
Vvi4g901 465 ProSiteProfiles LIM domain profile. 116 176 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g901 - - - vvi:100258119 970.689
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g901 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01211 . . Bma03g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14796 PF12315 DA1-like 2.60E-95 CL0126 Vvi TR