Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g902 ATGTTTCATCATTTTATACAGCATACAACTCCAGTTATTTCCATGTTACAGTTGTTGATGCCCCTTTCCTCGGTCCTTCTGGTGGTTTTTAGGAAGGATCCAAGGTATCAGGGAGACTATCTACTCAGCTCTTTAATCTTTCCTTGCTTACTTTGCCTTCAAGCCATTTCTGGGATCGACCGGATTCCATTTTGTCTGCAGATTCTTACAGGCAAGATTTTGCTAGCCCACAAGGGAATAACATTTGTCCTTATGGATTGGATCAAGATCCTAGAAGGTTCTGGCCATAAAATCTCAGAAGTGCAATATCACGGGACAGATGGGGATGGCATAATTTGGGGAGAGCCTTCAATTTCAGAGCATGGTAGGATGAAATTCACACTTCAGGGTGCACCCACAGATTTTGATGATCAAGATATCGCAGTTGCTATTGTTCGTTCCATTGAAGATTATGAAGCAGAGGAAGATAAAAAACTGAAAAAGTTGGTTGATAATGAATCTCAATTAAAGGAAGATGAACAACTTGCCAAAGCTCTTCAAGAGAGTTTGAATATGGAGTCTCCTCCTCGACGGGATGCTCGAAATATATTTCAACCTTTGACATTCTCCTCACTTGGTTTTAGGATCTGTGCTCGGTGCAACCTTGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGTTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTATTCCATCAAATGCAGCTGGAGAAACAGAGTATAGAGCACATCCTTTCTGGATGCAAGAGTACTGTCCCTCACATGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAACGAACAGAGGTAAGGGACATTAGGTATCTATCACTTGATGATGGTAGGAAACTATGTCTGGAGTGCCTGGACTCTGCTATCATGGATACACTAGAGTGCCAGCCTCTTTACCTTCAAATACAAGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAATCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTGGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGTTTCTTCAGCTTCAACGCCATCATCATCATCCACATCAGAGAAGGGTGCACGGTCTCAGTTTGAAAAGAAACTCGGTGAGTTTTTTAAAGATCAGATAGAGACAGATAGTTCACCAGCTTATGGGGACGGATTTAGGGCTGGTAACCAAGCAGTGCAGCAGTACGGCCTCAAGAGTACCCTCGACCATATTCGGCTGACAGGAAGCTTTCCTTACTGA 1719 43.63 MFHHFIQHTTPVISMLQLLMPLSSVLLVVFRKDPRYQGDYLLSSLIFPCLLCLQAISGIDRIPFCLQILTGKILLAHKGITFVLMDWIKILEGSGHKISEVQYHGTDGDGIIWGEPSISEHGRMKFTLQGAPTDFDDQDIAVAIVRSIEDYEAEEDKKLKKLVDNESQLKEDEQLAKALQESLNMESPPRRDARNIFQPLTFSSLGFRICARCNLEIGHERHLRRMGAVWHPECFRCHACGLRIFDLEFSVSGNRPYHESCYKDQNHPRCNVCKNFIPSNAAGETEYRAHPFWMQEYCPSHEHDGTPRCCSCERTEVRDIRYLSLDDGRKLCLECLDSAIMDTLECQPLYLQIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKSGHHLLPETRGLCLSEEQTVSTISRRPRISTGYRIINMMTEPCRLVRRCEVTAILILYGLPRLLTGTILAHEMMHAWLKLKGYRNLRQDVEEGICQVLAYMWLESEIHSSSGNNVSSASTPSSSSTSEKGARSQFEKKLGEFFKDQIETDSSPAYGDGFRAGNQAVQQYGLKSTLDHIRLTGSFPY* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17456542 17465760 + Vvi4g902 Vvi4g902 785681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g902 572 ProSitePatterns LIM zinc-binding domain signature. 210 244 IPR001781 -
Vvi4g902 572 Coils Coil 162 182 - -
Vvi4g902 572 CDD LIM_DA1 210 262 - -
Vvi4g902 572 Pfam Protein DA1 359 567 IPR022087 -
Vvi4g902 572 Gene3D Cysteine Rich Protein 206 269 - -
Vvi4g902 572 MobiDBLite consensus disorder prediction 496 516 - -
Vvi4g902 572 SMART lim_4 209 261 IPR001781 -
Vvi4g902 572 PANTHER PROTEIN DA1-RELATED 1 149 572 - -
Vvi4g902 572 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 170 189 IPR003903 -
Vvi4g902 572 MobiDBLite consensus disorder prediction 496 517 - -
Vvi4g902 572 PANTHER PROTEIN DA1-RELATED 2 149 572 IPR045218 -
Vvi4g902 572 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 235 - -
Vvi4g902 572 SMART uim 170 189 IPR003903 -
Vvi4g902 572 SMART uim 135 154 IPR003903 -
Vvi4g902 572 Pfam LIM domain 210 264 IPR001781 -
Vvi4g902 572 ProSiteProfiles LIM domain profile. 208 268 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g902 - - - vvi:100244429 954.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g902 Vvi18g879 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g902 . . . . . . . . . . . Cma07g00747 . Car07g00734 . . . . . . . . . . . . . . . . . . . . . Lsi01g01044 . . . . . . . . . . . . . Cmo07g00768 . . . . . . . . . . . . . . . . . . . . . . Chy02g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14797 PF12315 DA1-like 2.30E-101 CL0126 Vvi TR