Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g904 ATGACTGTCTCTCTCCTCTCCTTTGTCTTGCTTCTCTTCATTTCTTCAACCAACCATATCACAGCTCAATCACCAGCCACCCCAGTTACAAACTTCTCGTGCACCACAGACTCACCTGCCTCATGCCAAACATATGTCATCTACCGTGCTCAGGCACCTGGATTTTTGGACGTGGGAAATATATCTGATCTGTTTGGGATCAGTCGCTTATCAATTGCAGAAGCAAGCAATCTGGCTTCTGAGGAAGCTCGGTTGAGTCCAGACCAGCTTTTACTGGTACCTATCTTGTGTAGCTGCACTGGAAACCATTATTTTGCAAACATTACTTATAAGATCAAGACAGATGATAGCTTCTACTTCGTTTCAGTCACTGTGTTTGAAAATCTCACCAATTATAATGCAGTGGAAGCTTTGAACCCTGGTCTGGAACCGACCACCTTGCAGGTTGGTGTTGAAGTAGTCTTCCCTTTGTTCTGTAAGTGTCCATCGAAGTCACATTCGGATAAAGGCATCAACTATCTTATTACTTATGTGTGGCAACCTGGTGATGATGTATTGCTTGTGGGTACTAACTTGAAAGCATCCCCAGTTGATATCAGAGATGAAAATAACAATCTGAACTTTAGTGCTTCGGTGGACCAGCCAGTGTTGATCCCTGTTTCACAACCTCCACTTCTCACTCAGCCTGAAAGAAGGGCATCCAAAGGCAGGTGGATCCTTGCTTTGGTTTTGAGCACAGGAGCTCTTTTAATTTTCCTTTTGGTGAGCCTGCTGGTCTACACTGGTTTGATCAGGAAAAAGAAGACTCTGGATCATTCAGAGTCCTCTTTGGAGACCACTGATCTCATTAAACTACTTCCTGGGGTTTCAGGCTACCTTGGCAAGCCAATCATGTACGAGACTAAAGTCATTATGGAGGCAACAATGAACCTCAATGAACACTACAGGATTGGAGGATCAGTATACAGGGCCACAATCAATGGTCAGGTTGTTGCTGTAAAGAAAACCAAAGAAGATATCACAGAGGAATTAAGGATACTGCAGAAAGTAAATCATGGGAATCTGGTCAAATTGATGGGCGTCTCATCCGATGCTGATGGGAATCGCTTCTTGGTTTATGAATTTGCTGAAAATGGTTCACTGGATAAGTGGTTGCACCCAAAGCCTTCTTCCCCTTCAAGCTCTGTAGCTTTCCTCACATGGAGCCAGAGGATACAGGTAGCCCTAGATGTGGCCAATGGCCTGCAATATATGCATGAGCATACTCAACCAAGCGTTGTTCACAGGGATATCAGAGCAAATAATATACTTCTAGACTCCAGGTTTAAGGCCAAGATCGCAAACTTCTCTATGGCTACACCTGCTATGAACTCTATGATGCCAAAAGTTGACGTTTTTGCTTTTGGGGTTGTTCTATTGGAGTTGCTTTCAGGGAAGAAAGCCATGCAAATGAGAGCCAATGGTGAGATTGTTATGCTGTGGAAGGATATAAGGGAGATCTTAGAAGTCGAAGACAAGAGAGAAGACAGGATAAGGAGGTGGATGGATCCAACATTGGAGAACTTTTATCCCTTTGATGGTGCTCTCAACTTGGCAGGGTTGGCAAGGTCATGCACACAGGAGAAGTCTTCAGCAAGGCCAAGCATGGCAGAAATCGCCTTTAATCTCTCTGTCCTCAGTCAGACATCTTCTGAAACCTTGGAAAGGTCCTGGACTCAGGGGTTTGAACCAGAAGAAACAATACAAATAATCAATCCGGTCATAGCTCGTTGA 1773 44.22 MTVSLLSFVLLLFISSTNHITAQSPATPVTNFSCTTDSPASCQTYVIYRAQAPGFLDVGNISDLFGISRLSIAEASNLASEEARLSPDQLLLVPILCSCTGNHYFANITYKIKTDDSFYFVSVTVFENLTNYNAVEALNPGLEPTTLQVGVEVVFPLFCKCPSKSHSDKGINYLITYVWQPGDDVLLVGTNLKASPVDIRDENNNLNFSASVDQPVLIPVSQPPLLTQPERRASKGRWILALVLSTGALLIFLLVSLLVYTGLIRKKKTLDHSESSLETTDLIKLLPGVSGYLGKPIMYETKVIMEATMNLNEHYRIGGSVYRATINGQVVAVKKTKEDITEELRILQKVNHGNLVKLMGVSSDADGNRFLVYEFAENGSLDKWLHPKPSSPSSSVAFLTWSQRIQVALDVANGLQYMHEHTQPSVVHRDIRANNILLDSRFKAKIANFSMATPAMNSMMPKVDVFAFGVVLLELLSGKKAMQMRANGEIVMLWKDIREILEVEDKREDRIRRWMDPTLENFYPFDGALNLAGLARSCTQEKSSARPSMAEIAFNLSVLSQTSSETLERSWTQGFEPEETIQIINPVIAR* 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17481238 17483065 + Vvi4g904 Vvi4g904 785683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g904 590 SMART tyrkin_6 311 556 IPR020635 GO:0004713|GO:0006468
Vvi4g904 590 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 10 590 - -
Vvi4g904 590 Gene3D Phosphorylase Kinase; domain 1 291 375 - -
Vvi4g904 590 ProSiteProfiles Protein kinase domain profile. 238 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g904 590 Gene3D Transferase(Phosphotransferase) domain 1 376 458 - -
Vvi4g904 590 Pfam Protein tyrosine and serine/threonine kinase 332 456 IPR001245 GO:0004672|GO:0006468
Vvi4g904 590 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672|GO:0006468
Vvi4g904 590 Gene3D Transferase(Phosphotransferase) domain 1 459 576 - -
Vvi4g904 590 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 590 - -
Vvi4g904 590 SUPERFAMILY Protein kinase-like (PK-like) 319 556 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g904 - - - vvi:100259809 1144.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g395 Vvi4g904 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g904 . . . . . . . . . . . Cma07g00748 . Car07g00735 . . . . . . . . . . . . . . . . . . . Cone6ag1353 . Lsi01g01045 . . . . . . Bda14g01210 . . . . . . Cmo07g00769 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002802 1 2 1 0 0 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 2 2 1 1 0 2 2 1 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76637 PF07714 PK_Tyr_Ser-Thr 9.70E-24 CL0016 Vvi PK