Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g905 ATGGTCAACCAATTAACAACTACTGCATTTCATTCCACCCTTCTTCCCAGTTCAATCAAAATGGCTTGGCTATCCTTCATCTCTGTCTTTACTCTTTCTCTGATTTCTTTCTCTTCCTCCATTCTTGCTCAGCAATCATATGTGGGAAAGGGTACAACAGACTGCGACAACAATAATTTAACTTCTGTTCTTGGTTACGCCTGCAATGGTGTCAACGCTAGTTGCCAAGCTTTCCTTATCTTCAGATCTGAACCCCCATATAACGATGTTTCTTCCATATCTGATCTTCTGGGGTCTGACCCATCTCAGCTTGCCCAAATCAATTCAGTTGATGAGACTGCTACATTTGAAACAAAGAAAGAGGTCATTGTTCCAGTCAATTGCTCCTGTTCAGGTGAGTTCTCTCAGGCAAACACCTCTTATGTTGTTCAGCATGGAGATACCTACTTATTGATAGCAAATAACACCTTCGAAGGCCTCTCTACATGTCAAGCTCTCCGGAGTCAAAGAACTTCTCTAACTACTAATATATATACTGGTACAAAGCTTACTGTTCCTCTTAGGTGTGCTTGTCCTACCAAGAACCAAAGTGATGTGGGTGTCAAGTATCTCATGAGTTACTTGGTCGCTTCTGGTGATTATGTTTCAAGCATTAGTGTGAGATTTGGTGTGGATACTGGAATGACTCTTGAAGCTAATGAGCTTTCTGAGCAAAACCCCAACATTTATCCCTTTACTACCCTTCTAATTCCCCTGCAAAATCTGCCCTCAAGTTCCCAAACTATAAAAACATGGGTTTATGTCGTTGTTGGAGTTGTTGCCGGAAGTGCTCTTGTATTGCTGTTTGGCTCTGTTATTTTCTTCAAATTCTTTAGGAAAACTAGGAAGAAAACTGATCCAATTGCTATCTCAGAGAGCTTTGAGGCATGTGAGAAACCACTTAAGGAGGAACAGCATGAGTTCTTGGAGAGTATATCTAGCATAGCACAATCCCTCAAAGTTTACAAATTTGAAGAACTACAATCTGCAACTGATAATTTCAGCCCCAATTGTAGGATAAAGGGGTCTGTTTACCGTGGCACGATTAAAGGGGATTTGGCTGCCATAAAGAAAATGGATGGAGAGGTGTCAAATGAAATAGCTTTACTAAACAAGATCAACCATTTCAATGTCATCCGCCTCTCTGGCATTTGTTTTAATGATGGGCATTGGTACCTCGTCCATGAGTATGCTGTTAATGGACCCTTGACTGATTGGATCTATAACAACAATGATGACAGCAGGTTTTTAGTTTGGATGCAGAGAATTCAAATTGCTTTGGATGTGGCCACAGGGCTTAACTATCTCCATAGCTATACCAGCCCTCCCTATGTCCACAAGGACATAAAAAGCGGTAATGTGCTTCTTGATAGTGACTTCAGGGCTAAGATTGCTAACTTCGGTTTAGCAAGGTCAGCAGAGGGGCAGGAGGGTCAGTTTGCCTTAACCAGGCATATCATTGGGACAAGAGGTTACATGGCACCAGAGTATCTGGAGAATGGTTTGGTCTCCACAAAGCTTGATGTTTATGCATTTGGGGTTCTCATGCTGGAGATGCTTACAGGGAAAGAAGTTGCTGCATTATATGAAGGTGAGAACATGCACCTACCAGATGTCTTAGTTGCTGTGCTCCATGAGGGAGATGGAAAGGAGAAGTTGAGGAACTTCATTGATCCTTCCCTGAGTGGGAATTATCCTTTGGAACTTGCCATTGTTATGATCAGATTGATAGATAGCTGCTTAAAGAAATCTCCAGCAAGTCGCCCAGATATGGTTGAGATAGTGCAAGCCCTGTCAAGAACCTTGACCACTTCAGTGGCCTGGGAATTGTCTAATAATGTCTCAGGATACCAAAATTCCACACAACACCCAAAAGTTAAGCCAACCTGTTTGACAGAGACAGAGAGCATAGTTTATAACCGCCTCATCCCCATGAGATCTTCCAATTCAACCAAAATGGCCTCTCCATCTTTCTTCTCCGTCTTCACTCTCTCCCTGATTTGTTGCTTTTCCTTGATTCTTGCTCAGCAGTCTTACCTCGGCCTGGGCACAGCAGACTGTTACAATAATAATTATACTACTGTTCTTGGTTACACCTGTAATGGTGTAAACACCACCTGCCAAACTTACCTCATCTTCAGATCAGAATCCCCATATAACAATGTTTCTTCCATCTCTGATCTCTTGGCTTCTGACCCATCTCAGCTCGCTCAAATCAATTCAGTAACTGAGACTGCTACTTTTGACACAAACAAGGAGGTGATTGTTCCTGTCAACTGCTCTTGTTCAGGTAACTACTCTCAGACAAACACATCTTATGTTGTTAAAAATGGAGACTATCCCTTATGGATTGCAAACAATACTTTCCAAGGCCTCTCAACCTGTCAGGCTCTCCTAAACCAAAACCCTTCTGTAAGTGCTACAAATCTAAATCCTGGTACTTCAATTACTGTTCCTCTCAGGTGTGCTTGTCCAACAAAGGCCCAAAGCGATGCGGGTGTCAAGTATCTAATGAGTTACCTGGTCGCTTATGGTGATACTGTTTCAGCTATAAGTGGGAGGTTTGGTGTCGATACTGAAAGGACTCTTGAAGCTAATGAGCTTTCTGAGCAAGACACCATTAATCCTTTTACTACCCTTCTAATTCCTCTGCAAAATCCACCTTCAAGCTCCCAAACCATAAAGACATGGGTGTATGTTATTGTTGGAGTTGCTGCAGGAGTTGTTCTTCTTTTGTTCTTTGGCTATGTCATTTTCGTAAAATTCTTCAGAAAAACCAAGAAGAAAAATGATCAAATTGCTGTCTCAGAGAGCTTTAAACCACTTGAAAAACCCCTCAAGGTGGAAGAACATGAGTTCTTCGAAAGTATATCCAGCATGGCACAATCCGTCAAAGTTTACAAATTTGAGGAACTACAATCTGCAACTGACAATTTCAGCCCAAGTTGTCTGATTAAGGGATCTGTTTATCGTGGCACAATTAAAGGGGATTTGGCTGCCATTAAGAAAATGGATGGAAATGTGTCAAACGAAATAGCTTTACTAAGCAAGATCAACCATTTTAATGTCATCCGCCTCTCTGGCATTTGTTTTAATGATGGGCATTGGTATCTAGTTCATGAGTATGCTGTTAATGGATCCTTGAGTGATTGGATCTATTACAACAACAATGATAGGAGATTCTTGGTTTGGACGCAGAGAATTCAGATTGCTTTGGATGTGGCCACAGGGCTTAACTATCTCCATATACATGTCAGCCCTTCTTATATCCACAAGGATATGAAAAGTAATAATGTGCTTCTCGATGGGGATTTCAGGGCTAAGATTGCTAACTTTGATCAGGCAAGGTCAGCAGAGGGGCAGGAAGGTCAGTTTGCCTTGACGAGGCACATCGTTGGGACAAAGGGTTACATGGCTCCAGAGTATCTGGAGAATGGTTTGATCTCCACAAAGCTCGATGTCTATGCGTTTGGGGTTCTCATGCTGGAGATATTTACTGGGAAAGAAGTTGCCGCTCTATATGGAGGGGAAAGCATACACTTATCAGAGGTCTTGGCTGCTGTGCTTCATGAGGATGACGGAAAGGAGAAATTGGGGGACTTCATAGATCCGTCTTTAGATGGGAATTATCCTCCAGAACTTGCCATTTTTATGATCAGATTGATAGATAGCTGCTTAACGAAAGCTCCAGCAGGTCGCCCAGACATGGATGAGATAGTGCAATCCCTATCAAGAATCTTGGCCTCTTCACAAGCCTGGGAATCGTCTAATAATGTTTTCCTTGGTATGATGCATAATTCAATTCAGATGCAATTCAATCTCTCTCTCTCCCTTTTTTTTGCTAGTTTCTCACAGATATTTGGGAGTCTAGAATCGTGA 3918 42.04 MVNQLTTTAFHSTLLPSSIKMAWLSFISVFTLSLISFSSSILAQQSYVGKGTTDCDNNNLTSVLGYACNGVNASCQAFLIFRSEPPYNDVSSISDLLGSDPSQLAQINSVDETATFETKKEVIVPVNCSCSGEFSQANTSYVVQHGDTYLLIANNTFEGLSTCQALRSQRTSLTTNIYTGTKLTVPLRCACPTKNQSDVGVKYLMSYLVASGDYVSSISVRFGVDTGMTLEANELSEQNPNIYPFTTLLIPLQNLPSSSQTIKTWVYVVVGVVAGSALVLLFGSVIFFKFFRKTRKKTDPIAISESFEACEKPLKEEQHEFLESISSIAQSLKVYKFEELQSATDNFSPNCRIKGSVYRGTIKGDLAAIKKMDGEVSNEIALLNKINHFNVIRLSGICFNDGHWYLVHEYAVNGPLTDWIYNNNDDSRFLVWMQRIQIALDVATGLNYLHSYTSPPYVHKDIKSGNVLLDSDFRAKIANFGLARSAEGQEGQFALTRHIIGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEMLTGKEVAALYEGENMHLPDVLVAVLHEGDGKEKLRNFIDPSLSGNYPLELAIVMIRLIDSCLKKSPASRPDMVEIVQALSRTLTTSVAWELSNNVSGYQNSTQHPKVKPTCLTETESIVYNRLIPMRSSNSTKMASPSFFSVFTLSLICCFSLILAQQSYLGLGTADCYNNNYTTVLGYTCNGVNTTCQTYLIFRSESPYNNVSSISDLLASDPSQLAQINSVTETATFDTNKEVIVPVNCSCSGNYSQTNTSYVVKNGDYPLWIANNTFQGLSTCQALLNQNPSVSATNLNPGTSITVPLRCACPTKAQSDAGVKYLMSYLVAYGDTVSAISGRFGVDTERTLEANELSEQDTINPFTTLLIPLQNPPSSSQTIKTWVYVIVGVAAGVVLLLFFGYVIFVKFFRKTKKKNDQIAVSESFKPLEKPLKVEEHEFFESISSMAQSVKVYKFEELQSATDNFSPSCLIKGSVYRGTIKGDLAAIKKMDGNVSNEIALLSKINHFNVIRLSGICFNDGHWYLVHEYAVNGSLSDWIYYNNNDRRFLVWTQRIQIALDVATGLNYLHIHVSPSYIHKDMKSNNVLLDGDFRAKIANFDQARSAEGQEGQFALTRHIVGTKGYMAPEYLENGLISTKLDVYAFGVLMLEIFTGKEVAALYGGESIHLSEVLAAVLHEDDGKEKLGDFIDPSLDGNYPPELAIFMIRLIDSCLTKAPAGRPDMDEIVQSLSRILASSQAWESSNNVFLGMMHNSIQMQFNLSLSLFFASFSQIFGSLES* 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17484663 17489709 - Vvi4g905 Vvi4g905 785684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g905 1305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vvi4g905 1305 Pfam Protein kinase domain 1015 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g905 1305 Pfam Protein kinase domain 370 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g905 1305 SMART serkin_6 347 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g905 1305 SMART serkin_6 992 1260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g905 1305 Coils Coil 1303 1305 - -
Vvi4g905 1305 ProSiteProfiles LysM domain profile. 139 185 IPR018392 -
Vvi4g905 1305 Gene3D LysM domain 850 909 IPR036779 -
Vvi4g905 1305 SUPERFAMILY Protein kinase-like (PK-like) 972 1256 IPR011009 -
Vvi4g905 1305 CDD LysM 852 895 IPR018392 -
Vvi4g905 1305 Gene3D LysM domain 192 263 IPR036779 -
Vvi4g905 1305 Pfam LysM domain 207 251 IPR018392 -
Vvi4g905 1305 Pfam LysM domain 853 896 IPR018392 -
Vvi4g905 1305 Pfam LysM domain 786 832 IPR018392 -
Vvi4g905 1305 ProSiteProfiles LysM domain profile. 205 250 IPR018392 -
Vvi4g905 1305 ProSiteProfiles LysM domain profile. 851 895 IPR018392 -
Vvi4g905 1305 SMART LysM_2 785 832 IPR018392 -
Vvi4g905 1305 SMART LysM_2 140 186 IPR018392 -
Vvi4g905 1305 SMART LysM_2 852 896 IPR018392 -
Vvi4g905 1305 SMART LysM_2 206 251 IPR018392 -
Vvi4g905 1305 ProSiteProfiles LysM domain profile. 784 831 IPR018392 -
Vvi4g905 1305 SUPERFAMILY Protein kinase-like (PK-like) 327 611 IPR011009 -
Vvi4g905 1305 CDD LysM 206 250 IPR018392 -
Vvi4g905 1305 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 666 1271 - -
Vvi4g905 1305 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 666 1271 - -
Vvi4g905 1305 ProSiteProfiles Protein kinase domain profile. 921 1260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g905 1305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1102 1114 IPR008271 GO:0004672|GO:0006468
Vvi4g905 1305 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 21 625 - -
Vvi4g905 1305 Gene3D Transferase(Phosphotransferase) domain 1 1057 1279 - -
Vvi4g905 1305 Gene3D Transferase(Phosphotransferase) domain 1 412 629 - -
Vvi4g905 1305 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 21 625 - -
Vvi4g905 1305 ProSiteProfiles Protein kinase domain profile. 276 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g905 1305 Gene3D Phosphorylase Kinase; domain 1 962 1055 - -
Vvi4g905 1305 Gene3D Phosphorylase Kinase; domain 1 317 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g905 - - - vvi:100264999 1200.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76638 PF00069 Pkinase 2.70E-36 CL0016 Vvi PK