Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g910 ATGTCACCCGCAAGCGGCGCTTGCGGGGGTAGTGGTAGCAATGATGTTGGTGATTTTGAATGTAATATCTGCTTTGAATTGGCTCAAGACCCCATTGTTACTCTTTGTGGTCACCTTTACTGCTGGCCTTGCCTTTATGAATGGCTCCATCATCACTCACATTCCCAAGAATGCCCGGTTTGTAAGGCCCTCATACAGGAGGAAAAGTTGGTTCCTCTTTATGGCAGGGGGAAAACACCTAGTGATCCCAGATCAAAATCAATTCCTAATGATAGCATACCTAGTCGCCCAGCAGGGCAGAGACCTGAAACAGCTCCTCCAGTAGCAAACCCCGTTTCACATCTTGGGGATTCTGTTATAACCTTGTTCTATAAAAAATTTATCTGCCATACAAACACCATTGTGAATGTGTATTTTGTAGATTGTGGCTGTATGCTGTCGTTTACTTGTTTCTTGACTGCACTCTCTGCTGTCATTATAGACAATTCTTCATTGGCTTTACTAGAACTGGGATGCCTTGAGGTTTTGAATGGTAGGTTTGTATTCTAG 549 43.72 MSPASGACGGSGSNDVGDFECNICFELAQDPIVTLCGHLYCWPCLYEWLHHHSHSQECPVCKALIQEEKLVPLYGRGKTPSDPRSKSIPNDSIPSRPAGQRPETAPPVANPVSHLGDSVITLFYKKFICHTNTIVNVYFVDCGCMLSFTCFLTALSAVIIDNSSLALLELGCLEVLNGRFVF* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17564078 17565725 - Vvi4g910 Vvi4g910 785689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g910 182 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Vvi4g910 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 148 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi4g910 182 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vvi4g910 182 SMART ring_2 21 61 IPR001841 -
Vvi4g910 182 SUPERFAMILY RING/U-box 17 74 - -
Vvi4g910 182 MobiDBLite consensus disorder prediction 74 110 - -
Vvi4g910 182 CDD RING-HC_AtRMA_like 19 63 - -
Vvi4g910 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 79 IPR013083 -
Vvi4g910 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 11 148 - -
Vvi4g910 182 Pfam Zinc finger, C3HC4 type (RING finger) 19 66 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g910 K10666 - vvi:100246078 250.366