Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g913 ATGCCACGGAGTGGACTCCTAGGATATATCGCCTCCCACCGCCCAACACGCCCGCTGCCAGGAGGGGTGAGACTCTTTGACACAACTCAGTGCCCTTGCAACACTGAGTCCTCACTCGCTGCTAGAGTTCTCTTTTTCATCTTCTTCGTAAGGGTTTTGTTTTTACCAGTTGATTTGTTGTTTTTGGGTGCCCATGGATATATTGGAAAAAGGATGCTTTTTTCGGCTATGGGGAGTGATCGGGCTTTTGGGTATTGGAAGAGCTCCATTAGAGCCTTACATTCCCTTCACCAATTCAGACAAAAGAAACCTGTTCAGAGAACTAGTCAAAAGTTTAGGAAACCGACTGAGAAAGAAAATGTAGACCATAAAATTTACATGAGGGATACCATTGGAAATATATCTAAAATATTAAGGTATTTGACTTGGGATTCTGCTCAAGAACAGCTAGAAAAGCTCTCCATAAGATGGGATTCTTATACTGTCAATCAGGTCCTGAAATCCCATCCACCAATGGAGAAGGCTTGGTTGTTTTTCAATTGGGCTTCTCGGTTAAAGGGTTTTAAGCATGACCAGTTTACCTACACAACGATGCTGGATATATTTGGAGAAGCTAGGAGGATTGAGTCCATGAATTATGTTTTTCAGCAGATGCAAGAGAAAGGAATTAAGACTGATGCAGTTACTTACACATCACTGATGCATTGGTTTTCCAATGATGGGGATATTGAGAGAGCTGTGAGGGTGTGGAAGGAGATGAAAGCTAAGGGCTGTTGTCTGACAGTCGTTTCTTATACTGCTTATATGAAGATTCTATTTGATAATAAAAGAGTGAAGGAGGCAGCTGATGTTTATAAGGAGATGCTTCAATCTGGATGTGCTCCAAATTGTTACACTTACACCGTCTTAATGGAGCATCTAACTGGTTCTGGCAAGCACTTGCTCCAGTTCAGCTGTATTGCCTGCAAATATAAAGCAGCTCTTGAGATTTTTAGCAGAATGCAAGAAGCAGGGGTACAACCTGATAAAGCAACATGCAATATTTTAATTGAGAAATTTTGCAAAACAGGGCAGACATGGGCAATTACCCAAATTCTTCTGTATATGAAAGACAACTTCCTAGTCCTTCGGTACCCTGTATATCTGGAAGCCCTTCAAACATTAAAAGTTGCAGGTGAGAGTGATATCCTCCTCAGGCAAGTAAATCCTCATTTGAACGTTGGGTTGAGCAGCAAGGAGGAGATTGTTGAGTTTAAAGAAACTGTTGCTGATGTTCACTCCACTATAGATAGAGGATTTGTATTACTTTTTTTGACAAAGCAAAATTTTTATGCCATTGACTGCTTGCTTACTGGGATGATCCATAAGAATACTCGATTAGATTCTGTGATTATTTCACAGATCATTGAGGTAAATTGTGCTCATTGCAGAATCAATGGTGCATTATTGGCTTTTGAATACAGTGTGAAAATGGGCATAAACATAGAAAGGATAGCCTATCTTGCACTGATGGGTGTTTTCATCAGAGCGAATTCATTCCCAAAGGTTGCAGATATTGTTGAGAAGATGGTGAGGGCTGGAATTTCCCTTGGAATGTATTTGGGTGCACTCTTAATCTATAGACTTGGTTGTGCTAGAAGGCCTGGTTCTGCTGCAAAGGTTTTTGGTTTATTGCCTGACGACCAGAAAGGCACTGCTGCTTACACTGCTTTGATCAGTGCCTACTTCTCTTCTGGAAATGTTGACAAAGGACTTAAAATTTACAAGACCATGCAAAGGAAAAGGATTCATCCTGCCTTAGGCACATACAATTTACTATTAGCTGGTCTCGAGAAAAAGGGTAGAGCACGTGAAGCAGAAATCTATAGGAAGGAAAAGAAGACATTACACACTCATGGTCATTCCCAAGATATTGTTTCCATGGATGAAAAGATTTGTAACCTTCTATTTTCTGGAAATTTGGTATCATGA 1971 40.54 MPRSGLLGYIASHRPTRPLPGGVRLFDTTQCPCNTESSLAARVLFFIFFVRVLFLPVDLLFLGAHGYIGKRMLFSAMGSDRAFGYWKSSIRALHSLHQFRQKKPVQRTSQKFRKPTEKENVDHKIYMRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDEKICNLLFSGNLVS* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17578958 17583726 - Vvi4g913 Vvi4g913 785692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g913 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi4g913 656 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 98 655 - -
Vvi4g913 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi4g913 656 PANTHER OS10G0358700 PROTEIN 98 655 - -
Vvi4g913 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi4g913 656 Gene3D Tetratricopeptide repeat domain 148 314 IPR011990 GO:0005515
Vvi4g913 656 Gene3D Tetratricopeptide repeat domain 441 652 IPR011990 GO:0005515
Vvi4g913 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Vvi4g913 656 Pfam PPR repeat family 191 234 IPR002885 -
Vvi4g913 656 Pfam PPR repeat family 564 610 IPR002885 -
Vvi4g913 656 Pfam PPR repeat family 261 306 IPR002885 -
Vvi4g913 656 Pfam PPR repeat family 315 355 IPR002885 -
Vvi4g913 656 Gene3D Tetratricopeptide repeat domain 315 372 IPR011990 GO:0005515
Vvi4g913 656 TIGRFAM PPR: pentatricopeptide repeat domain 263 297 IPR002885 -
Vvi4g913 656 TIGRFAM PPR: pentatricopeptide repeat domain 228 261 IPR002885 -
Vvi4g913 656 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Vvi4g913 656 TIGRFAM PPR: pentatricopeptide repeat domain 567 598 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g913 - - - vvi:100256542 1167.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g913 Blo04g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01018 . Sed01g0084 . . . . . . . . Bhi10g02231 Tan07g1031 Cmetu11g0453 . Hepe10g0832 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010326 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31