Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g914 ATGCTGGAAGCAGTGGTGAATTCCAATTCCATGAATGGAGTTGATGATGGTGGGATTCCACAGCTGCATGGCAATGGAGAGAGCAGTGAAGAGGGTCTCACGGTACTTCCCCGTCACACCAAAGTTATTGTCACCGGCAACAACCGGACCAAGTCGGTACTTGTCGGCCTTCAAGGCGTCGTCAAGAAAGCCGTTGGGCTTGGCGGCTGGCATTGGCTGGTCCTTACAAATGGAATTGAAGTGAAACTACAAAGGAATGCTCTTAGTGTTATTGAAGCTCCGACCGGCCATGAGGATGATGATGACCTTGAATGTGAGAACATACACTGGAACGATTCTGATGTGGGAGAGTTTAGTCCACCTGGTTCTGATGATACTCGGAAGTTTTATAGAGCAAGGAATCGGCCCCATAAATCAGTTAGATCACAGAGGGCTATGAGCAGGCCTCTTTCTGATGATTCACAGTCTAAAGGATCTTATTCACCTACCCAGAGTTCAACGAAAGTTGACTTCAGCAAACTAGAAAAAACAGCACTACTGAGATATTGGAGACACTTTAACCTAGTGGATTCTATACCAAACCCATCAAAAGAGCAGCTAATTGATGTTGTTCAAAGGCATTTCATGTCACAGCAATTGGATGAATTGCAGGTGATTATTGGTTTTGCTCAGGCTGCAAAGAGGCTGAAAGCAGTTTGCAATTGA 705 45.39 MLEAVVNSNSMNGVDDGGIPQLHGNGESSEEGLTVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGHEDDDDLECENIHWNDSDVGEFSPPGSDDTRKFYRARNRPHKSVRSQRAMSRPLSDDSQSKGSYSPTQSSTKVDFSKLEKTALLRYWRHFNLVDSIPNPSKEQLIDVVQRHFMSQQLDELQVIIGFAQAAKRLKAVCN* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17584685 17588252 - Vvi4g914 Vvi4g914 785693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g914 234 Gene3D - 150 234 IPR038291 -
Vvi4g914 234 PANTHER - 1 233 - -
Vvi4g914 234 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 175 227 IPR025718 GO:0005515
Vvi4g914 234 MobiDBLite consensus disorder prediction 144 167 - -
Vvi4g914 234 PANTHER SAP30 1 233 IPR024145 -
Vvi4g914 234 MobiDBLite consensus disorder prediction 111 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g914 - - - vvi:100251235 474.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g914 Vvi18g893 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g914 . . . . . . . . Cmo04g00791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001291 3 3 1 3 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 2 76