Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g920 ATGGCACCACCTACCGCAAGGGATGCAAACCACCCCCAACGGAAATTGCAGGCGCTTCGGCCAACATCAGTGCATGTTCTTCCATGCAACCAAGCCCACAGTCCTCATCCTTCCCAAGTCCTGTACCCTCTTACCATGCCAGCCCATCCCTCGATTCCTACATCTCTCCCACCTCTTCGAATATCCAACAGTGCTCCTGTAACCCCGCCTCTTTCTTCCCCTACTTCGAGAGGTTCAAAGCGGAAACCTGACTGGGAATCCTTCTCAAATGGCTCCCTGAATTCCTTCCGCCACCCTCTATTTGCCGTATCAGCCCCCTCTAGTCCTACTCGCCGCAACCATCTTACACCTGCCACAATACCGGAATGTGATGAATCTGATGCCTCTACTGTTGATTCTGGTCGCTGGGTGAGTTTCCAGACAGTAGCACCCCAGGCAGCTCCATCTTCCCCTACATTTAATCTTGTAAAACCAGTGGCTATGGAGGGCCGGCCAGAGTTTGAGTTTGAGAGTGGCAGAGTGAAGGCGTGGGAGGGTGAGAGAATTCATGAGGTAGGAGTGGATGAACTGGAGCTTACACTTGGGAGTGGGAAGACTCGTGGTTAA 606 52.81 MAPPTARDANHPQRKLQALRPTSVHVLPCNQAHSPHPSQVLYPLTMPAHPSIPTSLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESFSNGSLNSFRHPLFAVSAPSSPTRRNHLTPATIPECDESDASTVDSGRWVSFQTVAPQAAPSSPTFNLVKPVAMEGRPEFEFESGRVKAWEGERIHEVGVDELELTLGSGKTRG* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17661358 17664518 - Vvi4g920 Vvi4g920 785699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g920 201 MobiDBLite consensus disorder prediction 53 90 - -
Vvi4g920 201 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g920 201 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 49 200 - -
Vvi4g920 201 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 49 200 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi4g920 201 MobiDBLite consensus disorder prediction 104 129 - -
Vvi4g920 201 MobiDBLite consensus disorder prediction 56 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g920 K14503 BZR1_2; brassinosteroid resistant 1/2 - vvi:100249673 298.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g920 . 52 202 BZR Transcription Factor Family AT1G75080 56.5 3.7e-46 182.6
Vvi4g920 . 35 202 BZR Transcription Factor Family AT1G19350 52.3 1.2e-44 177.6
Vvi19g79 . 1 97 BZR Transcription Factor Family AT1G78700 87.8 2.7e-46 183.0
Vvi18g898 . 29 165 BZR Transcription Factor Family AT4G36780 62.5 5.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34