Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g927 ATGACAACCGCCATGAATCAGCAGGTCCAAGATCATATGGAGCTCTTCACTCATATGTATCCCGGGTTGTACACTCAGGCGATGCCGGAACAAGGGGAGGCGAAGGTGCGGCGGAGGAGGAAGAAGAGCAAAGGAGAAAGTAGCAGTGGGTGTGCGAGGAAGAGGAAGCTGAGCGAGGAGCAAGTTACTCATCTAGAGTTGAATTTTGGTAATGAACATAAATTGGAGTCTGAGAGGAAGGATAAGATCGCCTCGGAGCTGGGGTTGGACCCCCGACAAGTGGCCGTCTGGTTTCAGAACCGGAGGGCTCGCTGGAAGAGTAAGAAGCTGGAGGAGGAGTTCTCCAAGTTGAAGATAGTCCACGAAAGTGTTGTGGTGGAGAAGTGTCGCCTTGAAACAGAGGTATTAACGCTAAAGGAACAGCTCTCAGACGCCGAGAAGGAGATACGACGGCTGTCGGAGCGCTCCGACGGCGTTTCAAGCAATAGCCCGACCTCGTCCTTGTCGAATGCGGTAGACGTAGACCCACCATTTTTTGGGGAATTTGGGGTGGTAGATGGGTTGGATAATGTGTTCTACATTCCGGAAAACAATTATGTTAGTGGCATGGAATGGGGATATCTATATGATATGTAA 636 50.47 MTTAMNQQVQDHMELFTHMYPGLYTQAMPEQGEAKVRRRRKKSKGESSSGCARKRKLSEEQVTHLELNFGNEHKLESERKDKIASELGLDPRQVAVWFQNRRARWKSKKLEEEFSKLKIVHESVVVEKCRLETEVLTLKEQLSDAEKEIRRLSERSDGVSSNSPTSSLSNAVDVDPPFFGEFGVVDGLDNVFYIPENNYVSGMEWGYLYDM* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17798123 17799885 + Vvi4g927 Vvi4g927 785706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g927 211 Coils Coil 135 162 - -
Vvi4g927 211 MobiDBLite consensus disorder prediction 27 57 - -
Vvi4g927 211 CDD homeodomain 53 109 IPR001356 GO:0003677
Vvi4g927 211 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Vvi4g927 211 Gene3D - 43 116 - -
Vvi4g927 211 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Vvi4g927 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 9 209 - -
Vvi4g927 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 209 IPR045224 GO:0003700
Vvi4g927 211 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Vvi4g927 211 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Vvi4g927 211 SMART HOX_1 51 112 IPR001356 GO:0003677
Vvi4g927 211 Pfam Homeodomain 54 106 IPR001356 GO:0003677
Vvi4g927 211 SUPERFAMILY Homeodomain-like 51 109 IPR009057 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14798 PF00046 Homeodomain 2.80E-16 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g927 K09338 - vvi:100253069 407.142