Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g929 ATGCCTGTTGCCATAAAGATGATACAACCGAACAAAACGTCAGCTGTGAGTCCTGATCGAAAGGAAAAATTTCAGAGGGAGGTTACAATACTATCTAGGGTTAAACATGAAAATATTGTGAAGTTTATTGGGGCATCTATAGAACCGACTATGATGATAATTACAGAGCTCATGAAAGGTGGTACACTTCAGCAGTACTTGTGGAGCATTCGTCCAAATTCTCCAGATCTGAAACTGTCTTTAAGTTTTGCTTTGGATATTTCTCGGGTTATGGAATACTTGCATGCAAACGGCATCATTCATCGTGACTTGAAACCTAGCAATCTGCTCCTCACAGAGGACAAGAAGCAAATTAAGGTTTGTGACTTTGGTCTAGCAAGAGAGGAGACAGCTGGTGATATGACGACTGAGGCTGGTACTTATCGGTGGATGGCTCCTGAGTTGTTCAGCACAGTTCCACTTCCAAGGGGTGCAAAGATACACTATGATCACAAGGTGGATGTGTACAGCTTCGCCATTATTCTGTGGGAGTTGCTAACAAACAGAACTCCATTCAAGGGGGTACAAAGCATACTAATAGCATATGCTGCAGCTAATAATGAAAGGCCCAGCGTGGAGAACATTCCACAGGATATTGCCCCATTCTTGCAGTCCTGTTGGGCAGAGGACCCAGCAAACCGACCAGAATTCATGCAAATCACAAACTTTCTGGTGGACTTCCTCCAAAACTTGTGCTCAGCACAAATTACACCAGCCCAGACTTTTGAGATTGAGCATCCCAGAAGCAATGTGACTGCAGACTCTGCAGGCTCCAATCATCCAATCAGCAAGGTTAGTGGAAAAATGAAGGCCAGGAGTCCATTGCCTTGTTTCCTCAGATGCTTTGATGACTGCCTTCCTGATTGA 906 44.26 MPVAIKMIQPNKTSAVSPDRKEKFQREVTILSRVKHENIVKFIGASIEPTMMIITELMKGGTLQQYLWSIRPNSPDLKLSLSFALDISRVMEYLHANGIIHRDLKPSNLLLTEDKKQIKVCDFGLAREETAGDMTTEAGTYRWMAPELFSTVPLPRGAKIHYDHKVDVYSFAIILWELLTNRTPFKGVQSILIAYAAANNERPSVENIPQDIAPFLQSCWAEDPANRPEFMQITNFLVDFLQNLCSAQITPAQTFEIEHPRSNVTADSAGSNHPISKVSGKMKARSPLPCFLRCFDDCLPD* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17821354 17829046 + Vvi4g929 Vvi4g929 785708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g929 301 Gene3D Transferase(Phosphotransferase) domain 1 2 267 - -
Vvi4g929 301 PRINTS Tyrosine kinase catalytic domain signature 55 68 IPR001245 GO:0004672|GO:0006468
Vvi4g929 301 PRINTS Tyrosine kinase catalytic domain signature 93 111 IPR001245 GO:0004672|GO:0006468
Vvi4g929 301 PRINTS Tyrosine kinase catalytic domain signature 166 188 IPR001245 GO:0004672|GO:0006468
Vvi4g929 301 PRINTS Tyrosine kinase catalytic domain signature 208 230 IPR001245 GO:0004672|GO:0006468
Vvi4g929 301 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g929 301 Pfam Protein tyrosine and serine/threonine kinase 2 237 IPR001245 GO:0004672|GO:0006468
Vvi4g929 301 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g929 301 CDD STKc_MAP3K-like 2 237 - -
Vvi4g929 301 PIRSF ILK 1 258 - -
Vvi4g929 301 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 1 269 - -
Vvi4g929 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Vvi4g929 301 SUPERFAMILY Protein kinase-like (PK-like) 3 253 IPR011009 -
Vvi4g929 301 PANTHER SERINE-THREONINE PROTEIN KINASE 1 269 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76639 PF07714 PK_Tyr_Ser-Thr 1.20E-54 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g929 - - vvi:100246176 610.912