Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g93 ATGTCCAATTTGACTTCTGCATCTGGGGAAGCAAGTGCTTCTTCAGCAAATCAAGCACCAGCAGCAGCAAAGAAGAAGAGAAGTCTTCCAGGCAATCCAGACCCAAATGCAGAAGTGGTAGCTTTATCACCCAAGACTCTCCAAGCAACCAACAGGTTTATATGCGAGATCTGTAACAAAGGGTTTCAGAGAGATCAGAACCTCCAGCTCCACAGAAGAGGCCACAATCTGCCATGGAAGCTGAAGCAAAGAACAAACAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAGCCTACATGTGTACACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGAATCAAGAAGCACTTTTCCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAGCGTTATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAGATTTGTGGCACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTAGCAGAAGAGAGTGCAAGGGCAATCACAGGAAACCCACTTCTCTCCTCACAACCTGGCTCTTCATCCTCCCATCTTAATCTCCAACCCCAACTCCATAGCCATGGCCCCCCATCTATTGATCTCTCCTCCTCATTATTCTCTGCAACTTCTCCACACATGTCTGCAACTGCATTGCTGCAACAAGCTGCACAGATGGGTGTAACAATGAGCAAGCCTTCTCCATCACCACCCATGCTCAGACCCCACCAAGCTCACATGTCTGCAGCCAATGCTGGTTTCAGTTCTACAGCAGTAGCCACATCTACAGCTGGTTCTGATCTGGGTTTGTCTTCACGTGATGAGATGGCAAGTGGGTTCATTCATGGCTTGGCTTCTTTTGGGAGTAAAGCTGCTGTTACCTCTGCAATGACAAAATCCCATTTCAGCAGAAGTGATCATGAAGGTGGTGGTGGCAATGATGGCTTGACAAGAGATTTCTTGGGTCTTAGAGCATTCTCTCATAGAGACTTTCTCAATATTCCTGGGCTTGATCAGATGAATTCTGCTTCTCCCTATGAGCAGCAGAATCAAAATCAAACACCTTGGCAAGGTTAG 1134 47.18 MSNLTSASGEASASSANQAPAAAKKKRSLPGNPDPNAEVVALSPKTLQATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPLLSSQPGSSSSHLNLQPQLHSHGPPSIDLSSSLFSATSPHMSATALLQQAAQMGVTMSKPSPSPPMLRPHQAHMSAANAGFSSTAVATSTAGSDLGLSSRDEMASGFIHGLASFGSKAAVTSAMTKSHFSRSDHEGGGGNDGLTRDFLGLRAFSHRDFLNIPGLDQMNSASPYEQQNQNQTPWQG* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 953960 957028 + Vvi4g93 Vvi4g93 784872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g93 377 MobiDBLite consensus disorder prediction 190 224 - -
Vvi4g93 377 Gene3D Classic Zinc Finger 32 100 - -
Vvi4g93 377 MobiDBLite consensus disorder prediction 358 377 - -
Vvi4g93 377 Gene3D Classic Zinc Finger 107 187 - -
Vvi4g93 377 MobiDBLite consensus disorder prediction 1 38 - -
Vvi4g93 377 Pfam Zinc-finger double-stranded RNA-binding 53 75 IPR022755 -
Vvi4g93 377 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Vvi4g93 377 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 201 - -
Vvi4g93 377 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 210 285 - -
Vvi4g93 377 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g93 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Vvi4g93 377 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
Vvi4g93 377 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 201 - -
Vvi4g93 377 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 210 285 - -
Vvi4g93 377 SMART c2h2final6 129 149 IPR013087 -
Vvi4g93 377 SMART c2h2final6 53 75 IPR013087 -
Vvi4g93 377 SMART c2h2final6 94 124 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g93 Vvi9g182 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14799 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g93 K25870 - vvi:100257789 606.675