Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g930 ATGGGGGCTGGGGAAGATACCACACCTACTAAGCCTTCCAAACCAACTTCTTCAGCTCAGGAAATGCCAACGACGCCCTCATATCCTGAGTGGTCGAGCTCTATGCAGGCTTATTATGGTCCTGGAGCTACACCACCTCCCTTTTTTGCTCCCTCTGTTGCTTCTCCAACTCCCCATCCATATCTGTGGGGAAGCCAGCATCCTTTAATTCCTCCATATGGAACACCAGTTCCATACTCAGCCTTATATCCTCCAGGAGGTGTTTATGCACATCCTAATTTGGCCACGGCTCCAAGTGCAGCACATTTAAACCCTGAGTTGGAAGGGAAAGGCCCTGAGGGAAAAGACAAGGCTTCAGCAAAGAAATCTAAAGGAACATCAGGAAATACTGTTAAGGGTGGCGAGAGTGGAAAGGCAGCTTCAGGCTCAGGAAATGATGGTGCCTCACCAAGTGCTGAAAGTGGAAGTGAGGGTTCATCAGATGCAAGTGATGAGAATACTAACCAACAAGAATTTGCTTCTAGTAAGAAGGGAAGTTTCAATCAGATGCTTGCTGATGCCAATGCACAGAATAACATCTCTGGAACAAGTGTTCAGGCTTCAGTTCCTGGGAAGCCTGTAATATCTATGCCTGCAACTAATCTAAATATTGGGATGGACTTATGGAGTGCATCTCCTGGGGGCTCTGGAGCTACAAAACTGAGACCAAATCCATCTGGCATCTCATCTTCTGTTGCTCCAGCAGCAATGGTTGGGCGTGAAGGCGTTATGCCCGACCAGTGGATTCAAGATGAACGTGAACTCAAAAGACAAAAGAGGAAACAATCTAACAGGGAGTCAGCTAGGAGGTCGAGATTACGGAAGCAGGCGGAGTGTGAGGAACTACAAGCAAAGGTAGAAACTTTGAGCACTGAGAATACTGCACTCAGAGATGAGCTGCAGAGGCTTTCTGAGGAATGCGAGAAGCTTACATCTGAAAATAATTCCATTAAGGAAGAATTGACTCGGGTATGTGGAGCAGATGCAGTGGCTGCAAACCTCAAAGAGAAAAACCCCACACAACTCCAATCTCAGGGCGTCGAGGGCAACAGTTGA 1095 47.4 MGAGEDTTPTKPSKPTSSAQEMPTTPSYPEWSSSMQAYYGPGATPPPFFAPSVASPTPHPYLWGSQHPLIPPYGTPVPYSALYPPGGVYAHPNLATAPSAAHLNPELEGKGPEGKDKASAKKSKGTSGNTVKGGESGKAASGSGNDGASPSAESGSEGSSDASDENTNQQEFASSKKGSFNQMLADANAQNNISGTSVQASVPGKPVISMPATNLNIGMDLWSASPGGSGATKLRPNPSGISSSVAPAAMVGREGVMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQAKVETLSTENTALRDELQRLSEECEKLTSENNSIKEELTRVCGADAVAANLKEKNPTQLQSQGVEGNS* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17832553 17863982 + Vvi4g930 Vvi4g930 785709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g930 364 SMART brlzneu 265 329 IPR004827 GO:0003700|GO:0006355
Vvi4g930 364 MobiDBLite consensus disorder prediction 259 274 - -
Vvi4g930 364 PANTHER G-BOX-BINDING FACTOR 1 1 363 - -
Vvi4g930 364 Pfam bZIP transcription factor 265 327 IPR004827 GO:0003700|GO:0006355
Vvi4g930 364 MobiDBLite consensus disorder prediction 256 291 - -
Vvi4g930 364 SUPERFAMILY Leucine zipper domain 268 324 IPR046347 GO:0003700|GO:0006355
Vvi4g930 364 MobiDBLite consensus disorder prediction 108 122 - -
Vvi4g930 364 MobiDBLite consensus disorder prediction 123 188 - -
Vvi4g930 364 MobiDBLite consensus disorder prediction 1 188 - -
Vvi4g930 364 Gene3D - 268 323 - -
Vvi4g930 364 MobiDBLite consensus disorder prediction 9 39 - -
Vvi4g930 364 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Vvi4g930 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 267 330 IPR004827 GO:0003700|GO:0006355
Vvi4g930 364 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 363 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi4g930 364 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 272 287 IPR004827 GO:0003700|GO:0006355
Vvi4g930 364 Coils Coil 278 333 - -
Vvi4g930 364 CDD bZIP_plant_GBF1 270 320 IPR045314 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g930 Vvi18g907 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14800 PF07777 MFMR 2.00E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g930 K09060 - vvi:100258205 676.396