Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g933 ATGTGTGCAGGCAGTGGGAGGGTGGAGTGTGATCTTTCCATCGGCTCTTTGCCTCTCTTATTTTTCTTTCTCTTTCTCGCTTTCCCCTTAGCGATGAAAGTCCCAGTTCCAGCCCAAAACAACCATTCTCCAAACCCTAAACCGCTTTCTTGTAACAATACCACCCGGAATACCGCTTTTCGGAGCCCTGCTACTGATACTATCAACGTGTGCTACGAGCCTACCTCTGTTCTCGACCTTCGCCGCAGCCCTAGCCCTGTGGCGGATAAGGCGGCCACGTTTCCAGGAATTACTGCCGTCTCCGACGTGTCGTTGCCACTGTCGGAGGAGCCTGGTTTTCAGTGGGAAGACCATGGGATGCATAATTTGGATGATTGGGATCCTACCGTGTGGGATTTCGTATTGCGTGATGACTCTGCCCCTGTCTTCGGGAGTGTTCCTCAGTTGGGTCCCTGCGACCCTCAATTCCCACACCTCCCTCTCCCTGACCTCCCACCTTCCCAACCCATCTATCATACTCAGCTTCTTCCTTTCGATTTTACTCTCTCTGAAATTTCTTCCAATCAAAACCACAACTTCAATCTCAACTCTTTCCACTGGAACGTTGGCTCCGAGTTTGTGGAGGAGCTTATTCGAGCAGCCGAGTGCTTTGGATCCAACAACTCACAGCTCGCTCAGGCGATATTGGCGCGGCTCAATCAACGGTTGCGAGCTCCGGTGGGAAAACCACTCCAGAGAGCTGCCTTCTACTTCAAAGAAGCTCTCCACTCTCTCCTAACGGGCTCCAACCGGAAGTCTCATTCGTCGGCATCGGAGATTGTTCAGACAATAAAAGCGTACAAGGCCTTCTCCATGATCTCTCCTATCGCTATGTTCTCCAACTTCACCGCCAGCCAAGCACTCCTCGAAGCTGTCGATGGATCACTCTTCATTCATATCATAGATTTCGACATCGGACTCGGAGGTCAGTATGCCTCTTTCATGAAAGAGATTGCGGACAGGTCAGAGGCTTGCAAAGTCAATCCTCCTGTTCTTCGAATCACCGCTGTCGTGCCCGAAGAGTACGCAGTTGAGAGCAGATTGATCAAAGAGAATTTGTTTCAGTTCGCTCAAGAGCTCAAAATAGAATTCCGTATTGAGTTCGTGTTGATTCCTACTTTCGAGGTTCTATCATTCAAAGCGGTCAAGTTCATCGACGGAGAAAAGACTGCTGTTAACATATCGCCGGCGATATTCCGACGTCTCGGTACCACCAATAATATCGCCGGATTTTTCTGCGATCTCCGGCGGATTTCCCCACAAGTTGTCGTGTTTGTAGACGGCGAAGGGTGGACCGATAGCGGAGCGACGTCGTTTAACCGGAATTTCATCAACGGCCTTGAATTCTACACAGCGATGCTGGAATCATTGGACGCTGGTGGCGCTGGCGCCGGCGGTGATTGGGTTCGTAAGATTGAGATGTCCCTGATTCAGCCGAAGATATTTGCGGCTGTGGGAGATGTGGGACGGCGGGTGACGGCGTGGAGGGAGCTGTTTTCCGGCGCGGGGTTGGGGCAGGTGCAGTGGAGCCAGTTCGCGGAGTCTCAAGCAGAGTGCCTACTAGGGAAGTCACAGGTAAGGGGCTTCCACGTGGCAAAGCGGCAGGCTGAGATGTTGCTTTGCTGGCACGGGAAACCATTGGTGGCCACGTCAGCATGGAGGTGGTTTGCTTGTAACTCAATTTTAGTATAA 1731 51.7 MCAGSGRVECDLSIGSLPLLFFFLFLAFPLAMKVPVPAQNNHSPNPKPLSCNNTTRNTAFRSPATDTINVCYEPTSVLDLRRSPSPVADKAATFPGITAVSDVSLPLSEEPGFQWEDHGMHNLDDWDPTVWDFVLRDDSAPVFGSVPQLGPCDPQFPHLPLPDLPPSQPIYHTQLLPFDFTLSEISSNQNHNFNLNSFHWNVGSEFVEELIRAAECFGSNNSQLAQAILARLNQRLRAPVGKPLQRAAFYFKEALHSLLTGSNRKSHSSASEIVQTIKAYKAFSMISPIAMFSNFTASQALLEAVDGSLFIHIIDFDIGLGGQYASFMKEIADRSEACKVNPPVLRITAVVPEEYAVESRLIKENLFQFAQELKIEFRIEFVLIPTFEVLSFKAVKFIDGEKTAVNISPAIFRRLGTTNNIAGFFCDLRRISPQVVVFVDGEGWTDSGATSFNRNFINGLEFYTAMLESLDAGGAGAGGDWVRKIEMSLIQPKIFAAVGDVGRRVTAWRELFSGAGLGQVQWSQFAESQAECLLGKSQVRGFHVAKRQAEMLLCWHGKPLVATSAWRWFACNSILV* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17877476 17879808 - Vvi4g933 Vvi4g933 785712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g933 576 Pfam GRAS domain family 207 567 IPR005202 -
Vvi4g933 576 ProSiteProfiles GRAS family profile. 197 567 IPR005202 -
Vvi4g933 576 PANTHER SCARECROW-LIKE PROTEIN 15 37 567 - -
Vvi4g933 576 MobiDBLite consensus disorder prediction 41 60 - -
Vvi4g933 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 567 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14801 PF03514 GRAS 7.40E-91 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g933 - - vvi:100251313 1075.85