Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g935 ATGAGTTTAAGAAATCAAGAACCACCCAACCGTAGTCTGGTTTGTGGGTATCTAATATTTGATGTAACGCGGAGGAATTGCATCTCTAATCCACTTGATGGACCATGGTTTAAAAACTTCCATACATGGTCTTCTTCATGTTACTCTGCTGGAGCTGCTCCAGATGTATCTTTTGGTGGATCTTCGAGTGATGAACAGCTTTCAAAGTCTGCAGCGTCATCTGACCAAGCTATTCTAGGTCACAGAACCTTGAAGCTAATTTCAGGATCATGTTACCTGCCACACCCTGATAAGGAAGAAACAGGTGGAGAAGATGCTCATTTTATTTGCATAGATGAACAAGCTATTGGTGTGGCAGATGGTGTTGGTGGCTGGGCAGATGTTGGTGTTGATGCAGGAGAATATGCCCGAGAACTTATGTCTAATTCAGTAACTGCAATTCAGGAAGAGCCAAAGGGTTCGATTGACCCATCTAGGGTGTTAGAGAAGGCCCACTCAAGCACAAAAGCGAAAGGATCTTCAACAGCTTGCATTGTAGCCCTCACAGACCAGGGACTCCAAGCCATTAATCTAGGGGACAGTGGATTTATAGTGGTTCGAGATGGATGCACAATTTTTCAATCCCCTGTGCAGCAGCATGGGTTCAATTTCACATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATGGATTGTTTGACAACTTGTATAACAGTGAAGTTACTGCTGTTGTTGTTCATGCGGTGAGAGCTGGATTGGGACCCCAAGTAACAGCTCAGAAGATAGCAGCTTTGGCACGACAGCGAGCACAGGACAGGATGCGGCAGACACCATTCTCTACTGCTGCTCAAGATGCCGGGTTCCGTTATTATGGGGGCAAGCTTGATGACATAACTGTAGTTGTGTCTTTTATAACTAGCACATCCAATGGATGA 999 45.85 MSLRNQEPPNRSLVCGYLIFDVTRRNCISNPLDGPWFKNFHTWSSSCYSAGAAPDVSFGGSSSDEQLSKSAASSDQAILGHRTLKLISGSCYLPHPDKEETGGEDAHFICIDEQAIGVADGVGGWADVGVDAGEYARELMSNSVTAIQEEPKGSIDPSRVLEKAHSSTKAKGSSTACIVALTDQGLQAINLGDSGFIVVRDGCTIFQSPVQQHGFNFTYQLESGRAGDLPSSGQVFTIPVAPGDVIVAGTDGLFDNLYNSEVTAVVVHAVRAGLGPQVTAQKIAALARQRAQDRMRQTPFSTAAQDAGFRYYGGKLDDITVVVSFITSTSNG* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17890574 17904569 - Vvi4g935 Vvi4g935 785714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g935 332 SMART PP2C_4 81 324 IPR001932 -
Vvi4g935 332 ProSiteProfiles PPM-type phosphatase domain profile. 87 326 IPR001932 -
Vvi4g935 332 SMART PP2C_SIG_2 86 326 IPR001932 -
Vvi4g935 332 Gene3D - 229 331 IPR036457 -
Vvi4g935 332 Gene3D - 97 222 IPR036457 -
Vvi4g935 332 PANTHER PROTEIN PHOSPHATASE 1 331 - -
Vvi4g935 332 SUPERFAMILY PP2C-like 91 324 IPR036457 -
Vvi4g935 332 Pfam Stage II sporulation protein E (SpoIIE) 115 323 IPR001932 -
Vvi4g935 332 PANTHER PROTEIN PHOSPHATASE 2C 1 331 IPR039123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g935 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - vvi:100261557 648.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g935 Vvi18g910 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g935 Blo04g00925 . . . Bpe15g00436 . . . Cmo04g00831 Cmo16g00707 . . . . . . . . . . . . . . . . . . . . . Cone8ag0798 Cone12ag0755 Cone6ag1609 Cone9ag1536 . . Chy07g01279 . . . . . . . . . . . . Cma16g00650 . . . . Cpe14g00554 . . . . . . . Cla07g00856 Cam07g0928 Cec07g0993 . Clacu07g0902 Cmu07g0902 Cre07g1270 Lsi07g00217 Csa04g00521 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83