Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g938 ATGCCGGTAGATTTAGATAATTCGTCTGCGATGACCGTCTCTACAGCTTCCGGTGAGGCCAGCGTGTCTTCTACCGGCAATCAACCTGCGCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGATCCGGACGCGGAGGTGATTGCTTTGTCTCCCAAGACTCTAATGGCGACAAATCGATTTGTTTGTGAAATCTGCAACAAAGGGTTCCAGCGAGACCAGAACTTGCAGCTTCATCGCCGGGGTCATAATCTTCCATGGAAGCTGCGGCAGAGGTCAAGTAAAGAGGTTCGGAAGCGAGTGTATGTTTGTCCAGAGCCATCTTGCGTTCATCACGAACCGTCGAGAGCTTTGGGCGATTTGACGGGGATAAAGAAGCATTTTTGCAGAAAACATGGGGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACTCGAAGATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGAGAGCGCCAAAACCCAGACTCAGACAGCGGTAGCCAATCCAAATTCAGATGAAGACCCAAAGATCGAGTCACCCCCGCCGCCGCCTCCCCCTCCTCCTCCCCCTGCACCAGCTGTTGCTCCGTCAACTGCTGTAATATCAGCAGTTTTGCCGATACAGAGTCCAGAGTTGCCGGAGAATCCAACTCAGATCTTGGAAGAAGCCCCACCAGCTGCCACCGGCCTAAATGCAAGCTGTAGTAGCAGTACTAGCTCGAGCAGTAATGCTACTGGATTCTCGGGCTTAAGCCGAGTCATGACTCGTCCTGATCGCCCAACTGAACTCACACCATCTTCTTCCACAGAGCCCATTTCTCTCTGCTTATCTACCAATCACGGATCGTCAATCTTTGGAACTGCTGGGCAAGAGCGCAGGCAATATGCGCCACCACCACAGCCTGCCATGTCTGCCACAGCCCTACTACAGAAGGCAGCTCAAATGGGTGCGGCTGCAACAAATGCCTCTCTGCTGCGTGGTTTTGGAATAGTTTCATCTACTTCTTCATCCGGGCAGCAAGAGAATCTACAGTGGAACCGCCAGCAAATGGAGCCAGAAAGCACGTCTGTGGCTGCAGGGCTGGGACTTGGGCTTCCCTGCGATGAAGGTTCCGGGCTGAAGGAACTAATGATGGGAACTCCTTCCTTGTTTGGTCCAAAGCAGACTACCTTAGATCTCTTGGGGTTGGGGATGGCAGCAAGTGGCAGCCCCTCTGGAGGGTTATCAGCTTTAATCACTTCCATTGGAGGAGGCCTTGATGTGGCTGCAGCAGCGGCCACATATAGAGGCGGGGAATTTGCAGGCAAAGACATGGGAAGGGTCTCCATTATATTTCACCTATACTGGAATTTTAGTTAA 1479 51.99 MPVDLDNSSAMTVSTASGEASVSSTGNQPAPPKPAPKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKTQTQTAVANPNSDEDPKIESPPPPPPPPPPPAPAVAPSTAVISAVLPIQSPELPENPTQILEEAPPAATGLNASCSSSTSSSSNATGFSGLSRVMTRPDRPTELTPSSSTEPISLCLSTNHGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSTSSSGQQENLQWNRQQMEPESTSVAAGLGLGLPCDEGSGLKELMMGTPSLFGPKQTTLDLLGLGMAASGSPSGGLSALITSIGGGLDVAAAAATYRGGEFAGKDMGRVSIIFHLYWNFS* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17933766 17936828 - Vvi4g938 Vvi4g938 785717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g938 492 MobiDBLite consensus disorder prediction 269 290 - -
Vvi4g938 492 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Vvi4g938 492 SMART c2h2final6 142 162 IPR013087 -
Vvi4g938 492 SMART c2h2final6 66 88 IPR013087 -
Vvi4g938 492 SMART c2h2final6 107 137 IPR013087 -
Vvi4g938 492 MobiDBLite consensus disorder prediction 7 28 - -
Vvi4g938 492 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Vvi4g938 492 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 298 - -
Vvi4g938 492 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 313 481 - -
Vvi4g938 492 MobiDBLite consensus disorder prediction 267 313 - -
Vvi4g938 492 MobiDBLite consensus disorder prediction 1 50 - -
Vvi4g938 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 298 - -
Vvi4g938 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 313 481 - -
Vvi4g938 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vvi4g938 492 Gene3D Classic Zinc Finger 118 201 - -
Vvi4g938 492 MobiDBLite consensus disorder prediction 198 235 - -
Vvi4g938 492 Gene3D Classic Zinc Finger 46 113 - -
Vvi4g938 492 MobiDBLite consensus disorder prediction 215 235 - -
Vvi4g938 492 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g938 Vvi18g917 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14802 PF00096 zf-C2H2 0.0049 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g938 K25869 - vvi:100263342 866.685